Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04648 ATGGAATTCAGTAAATCCTTTTTAAATCATAAAGTAACTAAGTCCTCACCTTCCCCTGCACTATGTTGTGTGGAGACCGTGCCTAAAGATGAACAAAATTCTCATATTACAGCTTTTAATTCTGGGGATGGATCTACCAATTCCTGTAATGAATCGTCTTCGTCAACCACCGTCCGCGATGTACATATATCAATGCGGTTAATGGAGGACTTTCTTGATCTTGCAAAAGAAAATACAGAAAAGGATCTGGAAACATGCGGTATACTTGGTGCATTTCTGGAGAAAGGAACCCTCTATATGACTACACTGATCATACCGAAGCAGGAATCAGCATCTAATTCTTGTAATGCCACAAATGAGGAGGAAGTTTTCACAATTTTAAATGAAAGATCCCTTTATCCTGTGGGATGGATCCATACGCACCCTTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCCTACCAGACGATGATTCCGGAGGCATTTGCCATTGTATTGGCACCAACTGATACCTCAAGGAGCTGTGGACTCTTTCGCATAACCGAACCTGATGGGATGAATATTCTAAAAAATTGTCCAGAAAGAGGATTTCATCCACACAAAGAACCAGATAATGGGAACCCTGTGTATGAACACTGCTCCAATGTGTACAAAAACTCAAATCTAAGGTTTGAAATATTTGATTTACGCTAA 708 0.3997 MEFSKSFLNHKVTKSSPSPALCCVETVPKDEQNSHITAFNSGDGSTNSCNESSSSTTVRDVHISMRLMEDFLDLAKENTEKDLETCGILGAFLEKGTLYMTTLIIPKQESASNSCNATNEEEVFTILNERSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQTMIPEAFAIVLAPTDTSRSCGLFRITEPDGMNILKNCPERGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEIFDLR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04648 235 PANTHER AMSH-LIKE PROTEASE 7 235 - -
Vifa1g04648 235 ProSiteProfiles MPN domain profile. 61 191 IPR037518 -
Vifa1g04648 235 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 57 165 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa1g04648 235 CDD MPN_AMSH_like 59 235 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vifa1g04648 235 SUPERFAMILY JAB1/MPN domain 61 189 - -
Vifa1g04648 235 Gene3D Cytidine Deaminase, domain 2 39 235 - -
Vifa1g04648 235 MobiDBLite consensus disorder prediction 35 55 - -
Vifa1g04648 235 FunFam AMSH-like ubiquitin thioesterase 2 41 235 - -
Vifa1g04648 235 SMART pad1_6 60 188 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04648 Vifa-Chr1 727712181 727714473 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04648 K11866 - gmx:100807282 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04648 1 727712181 727714473 Vifa1g04648 1 727712181 727714473 ECH