Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04625 ATGGGAGACGACTACCAAATTTTGTTTCTCCTAGAGGTTTACATCAAGGTGATCCATTTCTACCTATCTCTTTGTTATTTGAATGGAATTCTTCTTGCAGACAATCATCAAGGCAGTACAATGAAGGACTGTTGGAAATTTGTCAGATCTCTCCCACCTTTTTCTTCATCAACCACCATTTCAATTTCAAGGATAATGTTTGGGGGAAACAACAATGTAAACCGTGTTCTTCCTGGTTTCATAGATGAGACTCAAATTCAGTATCAAAATAATGCAGCAAATCAGTTGCAGTTGTTTGGAAATTTACAAGATGGATGTAGTGTTGATCTGGTTAACTTTGGAAATGAGCAAATCTGTTCCATGATTCCGCCAAATAATAAGCAAAGCAGGGATTTGGAAGATATTTCAAATCAGCAAAGGCTTCAAATTTCCTTAAATTACAATGCCCGTCAAGACGAACCCGATCGATCAGCAAGTATTCCAAACCCTAATCATGTGTCAACAGGATTGAGGCTTTCATACGATGATGATGAGCGTAACTCAACCGTTACTTCTGCTAGCGGCAGCATAACTACCACACCTATCATATTGTCTCTTGGTGACAATATCCGAACCGAGCTTGATCGACAGCAAGAAGAGTTGGACCAGTATATCAAACTTCAGAAGGAACAATTGTCAAAAGGAGTAAGAGATATGAAGCAAAAACACATGACATCTCTTGTTACTTCAATTGAGAAAGGCATTGGTAAGAAGCTAAAAGAAAAAGATGTGGAAATCGATAACATGAACCGCAAAAACAAGGAGCTAGTAGAGAGAATAAAACAAGTCGTTGTTGACGCGCAAAATTGGCACTATAGAGCAAAGTATAACGAATCAGTTGTCAACGTGTTGCGGAACAACCTTCAGCAGGCAATTTCACATGGAGCTGAGCAAGAACTAAAGGAAGGGTTTGGAGACAGTGAACTTGACGACGCTTCCTCGTATATGGATCCTAATAACTTCTTGAACATTTCAGGCGTGCCTATGAAATCTATTTACAAAAGCTACCAAGGAACGGAGAATCTTTATTGCAGAGCATGCAAAGAAAAAGAGGTTTGCATGTTGATGATGCCTTGTAGACACTTGTGCTTGTGTAAATATTGTGATGGATTTATCAATGTTTGTCCTGTATGCCAATTGGTAAAAACCGCAAGTTTCGAGGTTTATCTGTCTTAA 1215 0.3893 MGDDYQILFLLEVYIKVIHFYLSLCYLNGILLADNHQGSTMKDCWKFVRSLPPFSSSTTISISRIMFGGNNNVNRVLPGFIDETQIQYQNNAANQLQLFGNLQDGCSVDLVNFGNEQICSMIPPNNKQSRDLEDISNQQRLQISLNYNARQDEPDRSASIPNPNHVSTGLRLSYDDDERNSTVTSASGSITTTPIILSLGDNIRTELDRQQEELDQYIKLQKEQLSKGVRDMKQKHMTSLVTSIEKGIGKKLKEKDVEIDNMNRKNKELVERIKQVVVDAQNWHYRAKYNESVVNVLRNNLQQAISHGAEQELKEGFGDSELDDASSYMDPNNFLNISGVPMKSIYKSYQGTENLYCRACKEKEVCMLMMPCRHLCLCKYCDGFINVCPVCQLVKTASFEVYLS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04625 404 PIRSF SBP1_RNase_bind 66 404 IPR017066 -
Vifa1g04625 404 CDD mRING-HC-C3HC5_CGRF1-like 357 391 - -
Vifa1g04625 404 MobiDBLite consensus disorder prediction 151 169 - -
Vifa1g04625 404 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 341 403 - -
Vifa1g04625 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 404 IPR013083 -
Vifa1g04625 404 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 126 401 IPR017066 -
Vifa1g04625 404 Coils Coil 200 227 - -
Vifa1g04625 404 MobiDBLite consensus disorder prediction 151 187 - -
Vifa1g04625 404 Coils Coil 252 279 - -
Vifa1g04625 404 ProSiteProfiles Zinc finger RING-type profile. 357 392 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04625 Vifa-Chr1 724627886 724633889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04625 357 392 Miscellaneous Gene Families AT4G39050 41.667 6.19e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04625 K19042 - gmx:100791550 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04625 1 724627886 724633889 Vifa1g04625 1 724627886 724633889 ECH