Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04607 ATGGCACGCAAGAAGATTAGAGAGTATGATTCCAAGAGATTGTTGAAGGAGCACTTTAAGAGACTTTCTGGCAAAGACTTACCTATCAAGTCTGCACAAGTTACGGAGTCCACTGATTTCACTCAGCTGCAAGACAAGGAACCTTGGCTCTCTTCTTCTAAATTGGTTGTGAAGCCTGATATGTTATTTGGGAAGCGTGGTAAAAGTGGTTTGGTTGCCTTGAATTTGGATTTGGCACAAGTTGCTTCATTTGTGAAAGAGCGTCTCGGTAAAGAGGTTGAAATGGGTGGATGCAAGGGACCGATAACAACTTTCATTGTTGAACCTTTCATCCCACATAATGAAGAGTTTTACCTTAACATTGTCTCTGACAGACTCGGGAACAGCATAAGCTTTTCAGAATGTGGAGGAATCGACATTGAAGAGAATTGGGATAAGGTTAAGACTGTATTTGTTCCAACGGGATTGTCTGTTACATCAGAAATTGTTGCTCCACTTGTTGCAACCCTTCCCTTGGAGATCAAAGGGGAAATTGAGGAATTTCTCAAGGTGGTTTTCACTTTGTTTCAAGATTTGGATTTCACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTTGACGACACTGCTGCTTTCAAGAACTTCAAGAAACGTTGTCGTAATGGTTGCAGGTGGGGTGACATTGAATTTCCACTACCATTCGGAAGGGTTATGAGTGCCACTGAGTCTTTCGTTCATGGATTAGATGAAAAGACCAGTGCATCTCTAAAATTCACCGTGTTGAACCCAAATGGCCGAATTTGGACCATGGTTGCTGGTGGAGGTGCTAGTGTCATCTATGCCGATACAGTAGGAGATCTTGGCTTTGCATCCGAGCTTGGAAACTATGCCGAATACAGCGGTGCACCCAACGAAGAGGAGGTTTTGCAATACGCCAGAGTTGTGATTGATTGTGCAACTGCAAACCCCGATGGCCAAAAAAGGGCTCTCGTTATTGGAGGAGGCATAGCTAACTTCACCGACGTTGCTGCTACTTTTAGCGGCATCATTCGGGCACTAAAGGAGAAGGAATCAAAGTTAAAGGCAGCAAGAATGCACATTTACGTGAGGAGAGGAGGTCCAAACTACCAAAAGGGTCTAGCAAAAATGCGAGCACTCGGAGAGGAAATTGGAATCCCTCTTGAGGTGTACGGACCTGAAGCAACGATGACCGGTATATGCAAAGAGGCGATACACTGCATTACTGCTTCCGCTTAA 1293 0.4424 MARKKIREYDSKRLLKEHFKRLSGKDLPIKSAQVTESTDFTQLQDKEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEFYLNIVSDRLGNSISFSECGGIDIEENWDKVKTVFVPTGLSVTSEIVAPLVATLPLEIKGEIEEFLKVVFTLFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKRCRNGCRWGDIEFPLPFGRVMSATESFVHGLDEKTSASLKFTVLNPNGRIWTMVAGGGASVIYADTVGDLGFASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHIYVRRGGPNYQKGLAKMRALGEEIGIPLEVYGPEATMTGICKEAIHCITASA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04607 430 Pfam ATP citrate lyase citrate-binding 248 424 IPR032263 -
Vifa1g04607 430 Gene3D - 247 429 IPR016102 -
Vifa1g04607 430 FunFam ATP-citrate synthase alpha chain protein 247 429 - -
Vifa1g04607 430 PANTHER SUCCINYL-COA SYNTHETASE BETA CHAIN 5 226 IPR005809 GO:0006099
Vifa1g04607 430 SUPERFAMILY Succinyl-CoA synthetase domains 264 410 IPR016102 -
Vifa1g04607 430 FunFam ATP-citrate synthase alpha chain protein 1 234 - -
Vifa1g04607 430 Pfam ATP-grasp domain 6 203 IPR013650 -
Vifa1g04607 430 Gene3D - 1 231 - -
Vifa1g04607 430 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 4 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04607 Vifa-Chr1 722201824 722204918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04607 1 430 Acyl Lipid Metabolism Gene Families AT1G10670 86.512 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04607 K01648 - gmx:100818180 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04607 1 722201824 722204918 Vifa1g04607 1 722201824 722204918 ECH