Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04568 ATGCTGACGGCGCTTGCTCCTTATCCTTCCTCCACATTCCGACCAACATCCATTCGCTGCGCCAACGACCGCCAGGCGCTCTTTAACCGCATCGCTCCTGTCTATGATAACCTGAATGATTTGCTGAGCTTGGGTCAGCACCGGATTTGGAAGCGCATGGCAGTTTCCTGGACTGGAGCAAAAATGGGTGATCGTGTGTTGGATGTATGCTGTGGAAGTGGTGATTTAGCGTTTCTCTTGTCCAACAACGTTTCTTCCAATGGCAAGGTGATTGGTCTTGATTTCTCAAAGGAACAACTAATGGTTGCCTCATCACGTTCGTTCTCAAAGAACTGCTACAAGAATATCGAGTGGGTTCAAGGTGATGCTCTTGACTTGCCATTTGATGATGGTTGGTTTGATGCGATCACTATGGGATATGGTCTTCGAAATGTTGTTGATAAGCGTAAAGCCATGCAGGAAATTTTACGTGTACTGAAGTCCGGTTCAACAGTGTCTATACTTGACTTTAATAAAAGCAATGAGCTACTAACTTCTTCAATTACGGAATGGATGATTGACAATGTTGTTGTTCCTGTATCCTCTGTCTATGGCCTTTCAGAAGACTACAAATATCTCAAAAGTTCCATAAGAGAATTTTTAACAGGGAAGGAGTTGGAGAAACTTGCTTTAGAAGTAGGATTTTCGACTGCACGGCATTATGAGATCGGTGGAGGACTCATGGGGTGCTTGGTAGCTCAACATTAG 747 0.4431 MLTALAPYPSSTFRPTSIRCANDRQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWTGAKMGDRVLDVCCGSGDLAFLLSNNVSSNGKVIGLDFSKEQLMVASSRSFSKNCYKNIEWVQGDALDLPFDDGWFDAITMGYGLRNVVDKRKAMQEILRVLKSGSTVSILDFNKSNELLTSSITEWMIDNVVVPVSSVYGLSEDYKYLKSSIREFLTGKELEKLALEVGFSTARHYEIGGGLMGCLVAQH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04568 248 NCBIfam ubiquinone/menaquinone biosynthesis methyltransferase 26 247 IPR004033 GO:0008168
Vifa1g04568 248 CDD AdoMet_MTases 65 162 - -
Vifa1g04568 248 ProSitePatterns ubiE/COQ5 methyltransferase family signature 1. 35 50 IPR023576 GO:0008168
Vifa1g04568 248 Hamap Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 15 248 IPR004033 GO:0008168
Vifa1g04568 248 Hamap 2-phytyl-1,4-naphtoquinone methyltransferase [menG]. 23 248 IPR032904 GO:0042372|GO:0052624
Vifa1g04568 248 PANTHER METHYLTRANSFERASE 33 230 - -
Vifa1g04568 248 Pfam ubiE/COQ5 methyltransferase family 25 242 - -
Vifa1g04568 248 ProSiteProfiles UbiE family SAM-binding methyltransferase profile. 13 248 IPR004033 GO:0008168
Vifa1g04568 248 Gene3D Vaccinia Virus protein VP39 30 248 IPR029063 -
Vifa1g04568 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 18 239 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04568 Vifa-Chr1 714904993 714907302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04568 61 185 Acyl Lipid Metabolism Gene Families AT1G48600 28.000 3.73e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04568 K23095 - gmx:100789470 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04568 1 714904993 714907302 Vifa1g04568 1 714904993 714907302 ECH