Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04565 ATGAAGAGAAACATAAATTTTTCTCTAATTTTTTTCCTGTCTTTGTTATTGTTTACTTTTGTCACCTTCTATGTGGATGCAAGGAAGACTAACATGAAGAAAAAACTTCACAAACATCACAAAGACTCACATCCTCATCCAACACAAGTAAACACTTATGATATTATGTCTTTTGGTGCAAAGGGCAATGGAGTTTTTGATGATTCAAAGGCATTTTTAGCTGCATGGAAATCTGCATGCAAAGTTGTTGGTGCCACAATAAAAGTTCCTGAAAAATTCAAGTACCTCATTAAGGCCATTACTCTACAAGGCCCTTGCATGCCTAATCTTACTCTTCAGATAGATGGAACAATATTGGCTCCTCCTGAAGTAACTTCATGGCCAAAACCTAGTTTGTTTCAATGGATAAATTTCAAATGGGTGCAAAACTTCACTATCAAAGGCTATGGAACTATTGATGGTCAAGGCTTTAACTGGTGGAACAACTCACAACTTTCTGATATACAGAAAACTCACTCTAAACAAATTCCAAGTATGAAGCCAACGGCTATAAGATTCTACTCTAGTAACCTTATAAGGGTTAGAGATATCAAAATAATAAACAGTCCTCTATGCCATCTAAAATTTGATAACTCAAATGGAATCAAAGTTGATAACATTACAATATCTTCTCCTCAAAGTAGCCCAAATACTGATGGAATTCACCTGCAAAACACACATGATGTAGAAATTCAACATTCTAGTATCGGAACCGGTGATGACTGTGTGTCCATACAGACCGGTTGTTCTAATGTTCATGTCCACCACATAAAATGTGGCCCTGGTCATGGCATAAGTTTAGGAGGATTAGGAAAAGACAAAAGTTTGGCATGCGTCTCTGACATCATTGTTGAGGACATTGCAATGAAAAATACTCTATATGGAGCAAGGATCAAAACATGGCAGGGAGGAAATGGCATGGTTAAAAATGTAACATTTTCAAGGATCAAAGTGCATGATGTTATGTATCCAATAATGATAGACCAATATTATTGTGACAAACAAACATGCAAGAACCAAACAGGAACAGTGATGATTTCTGGTGTTAAATTTGATCAAATAAGTGGTACCTATGCAATGCAACCAGTTCATCTAGCTTGCAGTAATTCCATACCATGCACAGATGTTGATTTAACTGATATTCAGTTAAGGCCTTCCACTAAATATAGAGGCTATGAACAAGCTATGTGTTGGAACTCTTATGGAAAATCACAAGGTGAATTGGTGCCTTCAAGTATTGATTATTGTTTGAGAAGTGGTGGTGGGTTAATCAAGAGGATAGCAAAGTCACGAGATAGTGTGTGTTATAAGTTGTTGTAG 1359 0.3642 MKRNINFSLIFFLSLLLFTFVTFYVDARKTNMKKKLHKHHKDSHPHPTQVNTYDIMSFGAKGNGVFDDSKAFLAAWKSACKVVGATIKVPEKFKYLIKAITLQGPCMPNLTLQIDGTILAPPEVTSWPKPSLFQWINFKWVQNFTIKGYGTIDGQGFNWWNNSQLSDIQKTHSKQIPSMKPTAIRFYSSNLIRVRDIKIINSPLCHLKFDNSNGIKVDNITISSPQSSPNTDGIHLQNTHDVEIQHSSIGTGDDCVSIQTGCSNVHVHHIKCGPGHGISLGGLGKDKSLACVSDIIVEDIAMKNTLYGARIKTWQGGNGMVKNVTFSRIKVHDVMYPIMIDQYYCDKQTCKNQTGTVMISGVKFDQISGTYAMQPVHLACSNSIPCTDVDLTDIQLRPSTKYRGYEQAMCWNSYGKSQGELVPSSIDYCLRSGGGLIKRIAKSRDSVCYKLL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04565 452 PANTHER - 51 416 - -
Vifa1g04565 452 Gene3D - 38 430 IPR012334 -
Vifa1g04565 452 SMART pbh1 321 342 IPR006626 -
Vifa1g04565 452 SMART pbh1 292 313 IPR006626 -
Vifa1g04565 452 SMART pbh1 262 282 IPR006626 -
Vifa1g04565 452 SMART pbh1 212 238 IPR006626 -
Vifa1g04565 452 SMART pbh1 239 260 IPR006626 -
Vifa1g04565 452 SUPERFAMILY Pectin lyase-like 46 426 IPR011050 -
Vifa1g04565 452 Pfam Glycosyl hydrolases family 28 83 401 IPR000743 GO:0004650|GO:0005975
Vifa1g04565 452 FunFam polygalacturonase At1g48100 41 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04565 Vifa-Chr1 714314854 714317906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04565 7 448 Glycoside Hydrolase AT3G26610 58.874 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04565 K01213 - gmx:100803027 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04565 1 714314854 714317906 Vifa1g04565 1 714314854 714317906 ECH