Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04544 ATGTCCTCACCGGAGGGAAAACGATTAGAGGAAGAATTATCATACCCAATTCTCATAGCAGAACGAGTTCGCTCAGCGATTGAAGAAACCGACTCGTTCACACTCGAGTGTTCCGAAGTCTGGAAACAAGTCGAACGCCTCCTCCAAATGCTCCGAACGGTTGTCCGATTCGCCGCCACCTCGCCGCTTTACGAGCGTCCCGTCCGACGGGTAACGGCTGATACCGCGAAGAATCTAGAACGCACTTTGACTTTGGTCCGGAAGTGTAAGCGCCGTAGCATCCTCCACCGTGTTGTTACCATCGTCGGTGTCGCCGATTTTCGGAAAGTTTTGAGTTACCTCGACGCCTCCGTTGGAGATATGAAGTGGCTTTTGAGCATCCTCGACGGCGAAGGAGGACTAAATTTGGCGCTTCCTCCGATTGCGAGTAATGATCCTATTCTTGCTTGGGTATGGTCTTTTATTGCTTCGATACAAATGGGTCAATTGAATGATAAAATTGAAGCTGCGAATGAACTTGCTTCATTAGCACAAGATAATGATAGGTATCAGAAGATTATTGTGGAGGAAGGTGGTGTTCAGCCCCTTTTGAAGCTTCTTAAAGAAGCTGCTTCACCTGCTGCTCAAATTGCGGTCGCAACTTGTTTGTGTCATTTGGCTAATGATTTGGAGAGGGTTAGGGTTATTGTGAATGAAGCTGGAGTCCCTGCTGTTGTTCAGGTTCTTACTGACTCGCCGATTAGGGTTCAAACCCTAGCTTCTAATTTAGTTGCTAGGATGGCTAGACATGATCCTGTTGCTCAGGAGGATTTCGCGAGGGAGAACGCGATTAGGCCACTTGTTACGCTTTTATCGATGGATACGACTGTGGATGAGCAGCCGGGTAATAATGGTAGGCAGAGTATTCATTCTATTATTCAAATTAATAAGGAGTTAGGGAAGAAAACTGATTATAATTATATGTCTGGTAATGGTAATGGTAATAGTAGTAGACAGTTTGCGAATTCGTATTCCTATCATTATACCGAGGGGAGTAGCCGTGGAGGGAATTATAGGAAGGAGAGGGAAAATGTGGATCCTGTTGTGAAGCTTCAGCTTAAAATTAGCTGTGCGGAGGCGTTGTGGATGCTTGCGGCAGGGAGTGTGTCGAATAGTAGGAAGATAACGGAGACGAAAGGGATGCTTTGTTTGGCTAAGATTATTGAGAAGGAACAGGGAGAGTTGCAGCAGAATTGTTTGATGACTATAATGGAGATAACGGCTGCGGCTGAGTCGAATGCTGACCTTCGACGTGCTGCATTTAAGACCAACTCACCTCCTGCTAAAGCTGTTGTGGAACAGCTTTTAAGGATAATTAAAGAGGTTGACAGTCCGTCAATGCAAATTCCGGCGATAAAGTCTATTGGTTCGTTGGCTAGAACGTTTCCTGCTAGAGAGACTCGAGTAATTGAACCCCTTGTAGCACAACTGAGTAATAGAGACATGAATGTAGCAGATGAAGCAGCCATTGCTCTGACCAAATTTGCTTGTCCAGATAATTTCTTATATATTGAGCATTCTATGAAAATAATCGAATTCGATGCAGTCCCAGCAGTGATGAAACTGCTGAGGAATAACGATGTTAATCAGATGTATCATGGCTTAACTCTCCTTTGCTACCTTGCACTACATGCCGGGAGCAGTGAGTCCTTGGAACAAGCAAGGGTGTTGTTGGCTCTAGAGGGTGCAGATAAAACGATTCTTCCTCAGCATATAAGGGATTTGGTATCCAAAGCAATTGTACACCTCAATTTGTATCATGCTGGAATGAATTCTCAACCATTGTCATATATGCCTTGA 1839 0.4481 MSSPEGKRLEEELSYPILIAERVRSAIEETDSFTLECSEVWKQVERLLQMLRTVVRFAATSPLYERPVRRVTADTAKNLERTLTLVRKCKRRSILHRVVTIVGVADFRKVLSYLDASVGDMKWLLSILDGEGGLNLALPPIASNDPILAWVWSFIASIQMGQLNDKIEAANELASLAQDNDRYQKIIVEEGGVQPLLKLLKEAASPAAQIAVATCLCHLANDLERVRVIVNEAGVPAVVQVLTDSPIRVQTLASNLVARMARHDPVAQEDFARENAIRPLVTLLSMDTTVDEQPGNNGRQSIHSIIQINKELGKKTDYNYMSGNGNGNSSRQFANSYSYHYTEGSSRGGNYRKERENVDPVVKLQLKISCAEALWMLAAGSVSNSRKITETKGMLCLAKIIEKEQGELQQNCLMTIMEITAAAESNADLRRAAFKTNSPPAKAVVEQLLRIIKEVDSPSMQIPAIKSIGSLARTFPARETRVIEPLVAQLSNRDMNVADEAAIALTKFACPDNFLYIEHSMKIIEFDAVPAVMKLLRNNDVNQMYHGLTLLCYLALHAGSSESLEQARVLLALEGADKTILPQHIRDLVSKAIVHLNLYHAGMNSQPLSYMP 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04544 612 Gene3D - 157 316 IPR011989 -
Vifa1g04544 612 Gene3D - 361 431 IPR011989 -
Vifa1g04544 612 Coils Coil 160 180 - -
Vifa1g04544 612 PANTHER ARMADILLO REPEAT ONLY 4 9 600 - -
Vifa1g04544 612 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 234 IPR000225 GO:0005515
Vifa1g04544 612 SMART arm_5 179 221 IPR000225 GO:0005515
Vifa1g04544 612 SMART arm_5 222 262 IPR000225 GO:0005515
Vifa1g04544 612 SMART arm_5 470 510 IPR000225 GO:0005515
Vifa1g04544 612 Gene3D - 432 582 IPR011989 -
Vifa1g04544 612 Gene3D - 11 127 IPR036537 GO:0007166
Vifa1g04544 612 Pfam Armadillo/beta-catenin-like repeat 181 220 IPR000225 GO:0005515
Vifa1g04544 612 SUPERFAMILY ARM repeat 163 569 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04544 Vifa-Chr1 709133897 709135735 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04544 - - gmx:100779659 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04544 1 709133897 709135735 Vifa1g04544 1 709133897 709135735 ECH