Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04449 ATGGCGGATGTGACACTGCATATATACGATGTAACGAATAGTGGATCGGAGAAAGCCAACAACACCATTCTTCAGATCAATAAGATCTTCAAGGATGGTATTGGTCTTGGTGGCATTTTTCATAGTGCTGTTCAGGTTTATGGAGAGGATGAATGGTCATTTGGATACTGTGAGCAAGGTACTGGGGTTTTTAGCTGCCCTTCTGGACAGAACCCAATGTACACATATCGTGAATCCATTGTTCTAGGGAAAACAAACCTTTCCATTTTCAAGGTAAATCAAATATTGAGAGAACTCAGTAGAGAGTGGCCTGGAAGTGCATATGATCTGTTGTCCAAAAACTGCAACCACTTCTGTGATGAATTCTGTGAAAGGCTTGATGTACCAAAACTTCCAGGTTGGGTTAATAGGTTTGCTAATGCTGGTGATACTGCCATGGAAGTTGCGGAGAATACGGCATTACGGTTCCGGCAAGCAAAAACAGAGATTGTATCAGCGAGCAAAGTGGCATACAGGTTCCTCCTAGGTGTTACAAACAACGTCACTAACAATGTTACAAACAACGTTAGAACAGGTCCTGATTCCCCCAACAGTTCAAACAGTGGAGTATCTTCCCCGAGACTTCAAGCTTCTTGGTTGAAAAATATAATTACCAATGGTGCAAAACCATCCACTAGTTCAGAAGCTGAGAATCACAATGGGGTTGCTCCATTACAACCAACAAGAGAGGATGACAAGGCCCTGCTACGTAGTTCATCTTCTCGTAGTTCATCGTCTCGTATCGATAGTTGA 792 0.4268 MADVTLHIYDVTNSGSEKANNTILQINKIFKDGIGLGGIFHSAVQVYGEDEWSFGYCEQGTGVFSCPSGQNPMYTYRESIVLGKTNLSIFKVNQILRELSREWPGSAYDLLSKNCNHFCDEFCERLDVPKLPGWVNRFANAGDTAMEVAENTALRFRQAKTEIVSASKVAYRFLLGVTNNVTNNVTNNVRTGPDSPNSSNSGVSSPRLQASWLKNIITNGAKPSTSSEAENHNGVAPLQPTREDDKALLRSSSSRSSSSRIDS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04449 263 PANTHER DESUMOYLATING ISOPEPTIDASE 3 224 IPR008580 GO:0008233
Vifa1g04449 263 Pfam PPPDE putative peptidase domain 3 148 IPR008580 GO:0008233
Vifa1g04449 263 SMART DUF862_2a 2 155 IPR008580 GO:0008233
Vifa1g04449 263 MobiDBLite consensus disorder prediction 219 263 - -
Vifa1g04449 263 ProSiteProfiles PPPDE domain profile. 2 148 IPR008580 GO:0008233
Vifa1g04449 263 MobiDBLite consensus disorder prediction 219 234 - -
Vifa1g04449 263 MobiDBLite consensus disorder prediction 184 206 - -
Vifa1g04449 263 Gene3D PPPDE domains 1 169 IPR042266 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04449 Vifa-Chr1 691457602 691461819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04449 - - gmx:100814440 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04449 1 691457602 691461819 Vifa1g04449 1 691457602 691461819 ECH