Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04415 ATGGCAGACGCTGAGACATTCGCATTCCAGGCCGAGATCAACCAACTTCTTAGCCTTATCATCAACACCTTTTACAGCAACAAGGAGATTTTCTTGCGTGAACTTATCAGCAATTCTTCTGACGCTCTGGATAAAATTCGTTTTGAGAGTTTGACTGATAAAAGCAAGCTGGATGGACAGCCTGAACTTTTCATTAGGCTTGTGCCTGACAAAGCCAACAAGACACTCTCCATCATTGACAGTGGCATTGGAATGACCAAAGCAGATTTGGTCAACAATTTGGGTACTATTGCGAGGTCTGGAACCAAGGAGTTCATGGAGGCCTTGCAGGCTGGTGCTGATGTCAGCATGATTGGTCAATTTGGTGTTGGCTTTTACTCTGCTTACCTGGTTGCAGAGAAAGTCATTGTCACCACCAAACACAATGATGATGAGCAATACATTTGGGAATCACAAGCTGGTGGCTCCTTCACTGTTACAAGAGATACTGATGCTCAACAACTTGGAAGGGGAACTAAGATCACTCTTTTCCTCAAAGAGGATCAGCTGGAATACTTGGAAGAGAGGAAGATCAAAGATCTTGTGAAGAAGCACTCTGAATTCATTAGTTATCCAATTTACCTTTGGACCGAGAAGACTCTTGAGAAAGAGATCAGCGATGACGAAGATGATGAGCCCAAGGAAGAGGAAGAAGGGGCTGTGGAGGATGTTGATGAGGACAAGGTGAAAGATTCCAAGAAGAAGAAAAAGATTAAGGAGGTTTCTCATGAATGGGAACTCATCAACAAGCAGAAGCCAATCTGGCTGCGTAAACCAGAAGAGATCTCCAAGGATGAATATGCTGCTTTTTACAAGAGCCTCACGAATGATTGGGAAGAACACTTGGCTGTCAAGCATTTCTCTGTAGAGGGACAGCTTGAGTTCAAGGCCGTTCTCTTTGTCCCGAAAAGGGCACCATTCGATTTGTTTGACACCAGAAAAAAGATGAACAACATCAAACTTTACGTTAGGAGGGTGTTCATCATGGATAACTGCGAGGAGCTCATACCTGAGTACCTTGGATTTGTGAAGGGTGTTGTTGACTCTGATGACTTGCCACTCAACATCTCTCGTGAGACTTTGCAACAGAACAAGATTTTGAAGGTGATCCGGAAAAATCTTGTGAAGAAGTGCATTGAGATGTTCAACGAAATTGCAGAGAACAAGGATGATTACAACAAATTCTATGATGCTTTCTCCAAGAATTTGAAATTGGGTATCCACGAAGATAGCCAGAACAGGGCTAAGCTTGCTGATTTACTCAGATACCACTCCACAAAGAGTGGTGATGAGATGACAAGCTTGAAGGACTATGTTACAAGAATGAAAGAAGGCCAGAAAGACATCTACTACATCACTGGAGAGAGCAAAAAGGCTGTGGAGAATTCTCCATTCTTGGAGAGACTCAAGAAAAAGGGCTATGAAGTTCTCTTCATGGTTGACGCCATCGACGAATATGCTGTTGGACAGCTAAAAGAGTATGACGGAAAGAAACTGGTTTCTGCAACAAAGGAAGGACTGAAGTTAGATGATGAGACTGAAGAAGAGAAGAAGAAAAAAGAGGAAAAGAAGAAATCATTTGAAGATCTTTGCAGGGTCATGAAAGACATATTGGGAGACAAAGTGGAGAAGGTTGTTGTCTCTGACAGGATTGTTGATTCACCTTGCTGTTTAGTGACTGGTGAATATGGATGGACTGCAAACATGGAAAGGATCATGAAAGCTCAGGCTCTGAGGGATAGCAGCATGGGAAGCTATATGTCTAGCAAGAAAACTATGGAAATCAACCCTGATAATGGTATCATGGAGGAGTTGAGGAAGAGGGCTGAAGCTGACAAGAACGACAAATCGGTGAAGGACCTTGTGCTGCTGCTTTTTGAGACAGCTCTTTTGACATCAGGTTTTAGCCTTGATGAACCCAACACATTTGCTGGACGGATTCATAGGATGTTGAAGTTGGGTCTTAGCATTGATGACGAAGAGGCTGGTGTGGATGATGTTGATATGCCTCCTTTGGAAGAGGATGGTACTGAGGAGAGCAAGATGGAGGAAGTGGACTAA 2100 0.4324 MADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRLVPDKANKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDTDAQQLGRGTKITLFLKEDQLEYLEERKIKDLVKKHSEFISYPIYLWTEKTLEKEISDDEDDEPKEEEEGAVEDVDEDKVKDSKKKKKIKEVSHEWELINKQKPIWLRKPEEISKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKDDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFEDLCRVMKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFAGRIHRMLKLGLSIDDEEAGVDDVDMPPLEEDGTEESKMEEVD 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04415 699 Gene3D - 262 430 - -
Vifa1g04415 699 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5 212 IPR036890 -
Vifa1g04415 699 Coils Coil 523 543 - -
Vifa1g04415 699 Gene3D - 431 517 - -
Vifa1g04415 699 MobiDBLite consensus disorder prediction 218 237 - -
Vifa1g04415 699 MobiDBLite consensus disorder prediction 673 699 - -
Vifa1g04415 699 SUPERFAMILY HSP90 C-terminal domain 542 664 IPR037196 -
Vifa1g04415 699 Pfam Hsp90 protein 184 691 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa1g04415 699 CDD HATPase_Hsp90-like 14 202 IPR020575 -
Vifa1g04415 699 FunFam Heat shock protein 90 alpha 262 430 - -
Vifa1g04415 699 FunFam Heat shock cognate protein 2 228 - -
Vifa1g04415 699 Gene3D - 2 228 IPR036890 -
Vifa1g04415 699 FunFam Heat shock protein 90 alpha 518 669 - -
Vifa1g04415 699 SUPERFAMILY Ribosomal protein S5 domain 2-like 263 518 IPR020568 -
Vifa1g04415 699 SMART HKATPase_4 27 182 IPR003594 -
Vifa1g04415 699 Gene3D - 518 669 IPR037196 -
Vifa1g04415 699 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 5 696 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa1g04415 699 Hamap Chaperone protein HtpG [htpG]. 2 665 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa1g04415 699 PRINTS 90kDa heat shock protein signature 170 187 IPR020575 -
Vifa1g04415 699 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Vifa1g04415 699 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Vifa1g04415 699 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Vifa1g04415 699 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Vifa1g04415 699 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Vifa1g04415 699 PRINTS 90kDa heat shock protein signature 188 206 IPR020575 -
Vifa1g04415 699 MobiDBLite consensus disorder prediction 218 241 - -
Vifa1g04415 699 FunFam Heat shock protein 90 alpha 431 517 - -
Vifa1g04415 699 PIRSF HSP90_HTPG 1 699 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa1g04415 699 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 181 IPR003594 -
Vifa1g04415 699 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04415 Vifa-Chr1 687759691 687762054 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04415 K04079 - gmx:100811234 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04415 1 687759691 687762054 Vifa1g04415 1 687759691 687762054 ECH