Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04401 ATGCATGAATATGAATACCCTTGTTGTGAATCTAAATTCTGGTTATTTCTAATTACATGTCTAGTGATTGTGTCATTGGCAGGCATTACATCAGGCCTAGCATTAGGAATATTGTCATACAGTCAGGTCGATCTCGAGGTTCTCATTAAAGCAGGCAGACCAAAAGACAAAAAACATGCAGAAAGGATTCAACCTTTTGTAAAAAATGGACATTTTGTTTTGTGCACTCTTCTTCTTGGAAAATCATTGGCTATGGAGGCGCTGCCGATTTTTATGGACTTGATCATTCCATCATGGTTTTCTATTCTCATGTCAGCACCTTTGGTGACTGTGTTTGCAGAGATTTTGCCTCAAGCTGTTTGCTCTAGATATGGACTTACTTTTGGTGCTAAATTGGCACCCTTTACTCATTTTCTTCTGCTCATCTTCTTTCCAATAACTTATCCAGCAAGTAAGGTACTTGATTGGGCTCTAGGGAAAGAACATTCGGTTCTTCTAAGAAGATCGGAGTTGAAGACATTTGTCGACTTACATGCAAATCAGGCCGGAAAAGGAGGAGAATTATCTCATCATGAAACTTCTATAATCGCTGGTGCTATGGATTTGACTCAGAAGACAGCTATAGATGCAATGACACACATATCTGAAATGTTTTCTCTTGACATAAATTCCAAACTAGACATGCATGCAATGACACAAATAATGAGTAAAGGTCACAGTAGAGTGCCTATACATTCTGGCAACCCAAGAAATATTATTGGTCTCATCTTGGTTAAGAATTTAATCTTCTGCCGCCCTGAGGACGAGAGTCCAATCAAGAATTTGATTATCAGGAAAATTCCTAGGGTTTATGAAAGTTGGCCATTGTATGAGATATTGAATCAATTCAAGAAGGGTCATAGCCATATGGCTGTTGTGTTGAAGGGAAACATGGAGACAGAAAGCAATGAAGCAGCTCATGCTGTGGATTCACCAATATTTTTGAATATAATAACTAATAAAGAATCAAACCATGCTCAAATTAATGGAGAATCAAATTCTTCATATGTCCTAGAAATGAGTGAGAGAAGTTCAAATCAAGAATCTAGTGATGTTGAATTTCATAGTCCAACATTAGAAAATGTGATGGTGCTAGACAATGAAGTAGGACAAGAATCAGAGCCATGGGAGCATGAAATTGGATGTATGACACATGAACATATAGAAGCTGTTGGTATCATTACAATGGAAGATGTTATGGAGGAATTATTACAAGGAGATATATTGGATGAGACTGATGAATATGTTCATGTTCAAAAGAACATTAAAATTAATTTGAGGCAATCACATAGATCACAATCAAGATCATCAAGAAGAAATTCTGGATCAAGTCGTCGTTGA 1380 0.3696 MHEYEYPCCESKFWLFLITCLVIVSLAGITSGLALGILSYSQVDLEVLIKAGRPKDKKHAERIQPFVKNGHFVLCTLLLGKSLAMEALPIFMDLIIPSWFSILMSAPLVTVFAEILPQAVCSRYGLTFGAKLAPFTHFLLLIFFPITYPASKVLDWALGKEHSVLLRRSELKTFVDLHANQAGKGGELSHHETSIIAGAMDLTQKTAIDAMTHISEMFSLDINSKLDMHAMTQIMSKGHSRVPIHSGNPRNIIGLILVKNLIFCRPEDESPIKNLIIRKIPRVYESWPLYEILNQFKKGHSHMAVVLKGNMETESNEAAHAVDSPIFLNIITNKESNHAQINGESNSSYVLEMSERSSNQESSDVEFHSPTLENVMVLDNEVGQESEPWEHEIGCMTHEHIEAVGIITMEDVMEELLQGDILDETDEYVHVQKNIKINLRQSHRSQSRSSRRNSGSSRR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04401 459 Gene3D - 192 332 IPR046342 -
Vifa1g04401 459 ProSiteProfiles CNNM transmembrane domain profile. 9 192 IPR002550 -
Vifa1g04401 459 PANTHER METAL TRANSPORTER CNNM 3 449 IPR045095 GO:0010960
Vifa1g04401 459 CDD CBS_pair_CorC_HlyC_assoc 206 307 IPR044751 -
Vifa1g04401 459 MobiDBLite consensus disorder prediction 439 459 - -
Vifa1g04401 459 SUPERFAMILY CBS-domain pair 195 418 IPR046342 -
Vifa1g04401 459 FunFam DUF21 domain-containing protein 190 324 - -
Vifa1g04401 459 Pfam Cyclin M transmembrane N-terminal domain 18 188 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04401 Vifa-Chr1 684526978 684533914 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04401 K16302 - gmx:100791387 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04401 1 684526978 684533914 Vifa1g04401 1 684526978 684533914 ECH