Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04397 ATGTCATCATCAACCACAAACAACACCAACAAGAATATGAACGACGTTGATCGTTTATTCGCATGCTTCAAGTGCGGTTTATCACCGCCTCCTTCTGCTTTGATTGAAAGAAAAAGAAGGAAAAGGAAATTGGAGAAGGAAAAGTTGAAGAATGAATTGGAATCGGAATCTCCCAATCCAGGATCAATTGGAGGAGGAGAGAAAACTCCGTTATCATGCATCAAAACCACAAACGTCGAATCTTCCATAGAGAAACTTAAATCAGCAATAGCTAAAACCAAAAGCTGTAGTAGTAGGAAGCAGATCTCTCCAGTTGTATTCTATGGTTCTCCTCATGGCGTGCCTCCAAAAAAACCAACCAGTTTATGGCGATTATTGCATGAGATACGTGTTGATCTCTCTCAGCGAAATAAACAGAACTTAAGGAAGGAAGTTTGGTTTACATTCCCAAGGCAGGATGAAGCAGTAAAATTTGCCAAAGAACAAGAAGATGTTCATCTCTTTAGTTACCAAGATCACTTTAATGGCCAGAGAAGGTTCCTTGTGTCTACATATACAGAATTCTGGCGAAGGTACAAAAACATGCCTTCCAAATTCCGTCATCATTATGAAGTGATTCAAGAGGGTTTACCTTGCCACCTTTACTTTGATTTGGAGTTTAATACAAGAGTCAACATAGGAAAGAATGGAGATGATATGGTTGATCTTTTGATATCAGTAGTTTTAGAAGCCTTACATGAAAAGTATGAAATCCATGGAGAGCGTGATTGGATAGTAGAACTTGATTCTTCAACTGAAGATAAGTTTTCTCGTCATCTAATAATACGCATACCAAAGGCTGCATTTAAGGATAACTCTCATGCAGGTGCCTTTGTTTCAGAAGTTTGCTCAAGAATTCTAAATGCGAAGGGGGAAGATAAAAGTTATGAAAAGTTGTTTGTAGCAAAAGATGACAATGAATCTGCTTGCCAACTTTTTGTGGATACTGCTGTATATACTAGAAATCGCTGTTTCCGTCTTCATCTATCTTCAAAGGCAGGAAAAAGTTCAATTCTTTTGCCGACAGAGAGATTTAAGAGCAAGCACTTGAGTGAAGAAGACATGTTCATGGCTTCCTTGATCTGCAACATGGACGATGATTGCGGAAAACTTATGGTCTGCAAACCAGACTTAGATTGCGCGAAGACTCTGCATTTTGATACAGAGTTGAATTATAATCTTGGAAACTCTGTCCAAATTCACCCAGAACTTACATTTAATACTTGCACAAGTGAAGATTCAAGAACATACTTCATGGGAAAGTCACCATTCCCATTTGTGGACGAATTTATATCATCTGTTGCCTCTGTTGGGAATATACCAGGAAAAATTCATAGCTGGTATTTATTCTCTGAATTTGGACTGCTGATCTACAGCATGACAAAAAATAGATACTGCGAGCGAATTGGCAGACAACATAAAAGCAATAACGTGATGTTCGTTGTTGACCTAAAAAGGGTAATGTACTATCAGAAATGTTATGATCCTGACTGCAGAGGTTTCCGATCTTCTTCGCGACCAATTCCAATTCACTTGTTCTCCAATCCTTCAGTTGTTGGTTCATCTGGGATGTCAAATGATATACAGCCAGTAGATGATAAGTGGGGACATCAGCCTGATGATAACAGCAAATCGAATTTTCTACAATATGAAGACACTGTTGAGGACAACTCCAGTGATTCTTGGTGGCTAGAAGCCATAAAAGTACTTGAGGATGTGGAAAGTCAGCAAAATGCAACAGAGTTAAGCCCCAAGCAGGAGTATGATGGCGATGATGAGTGGTGGCTGGCTGTAGAAAGGACTGCATCGCAGATTGAACTGACATATAATTCAACTAATTCAGAATGTTAG 1890 0.3905 MSSSTTNNTNKNMNDVDRLFACFKCGLSPPPSALIERKRRKRKLEKEKLKNELESESPNPGSIGGGEKTPLSCIKTTNVESSIEKLKSAIAKTKSCSSRKQISPVVFYGSPHGVPPKKPTSLWRLLHEIRVDLSQRNKQNLRKEVWFTFPRQDEAVKFAKEQEDVHLFSYQDHFNGQRRFLVSTYTEFWRRYKNMPSKFRHHYEVIQEGLPCHLYFDLEFNTRVNIGKNGDDMVDLLISVVLEALHEKYEIHGERDWIVELDSSTEDKFSRHLIIRIPKAAFKDNSHAGAFVSEVCSRILNAKGEDKSYEKLFVAKDDNESACQLFVDTAVYTRNRCFRLHLSSKAGKSSILLPTERFKSKHLSEEDMFMASLICNMDDDCGKLMVCKPDLDCAKTLHFDTELNYNLGNSVQIHPELTFNTCTSEDSRTYFMGKSPFPFVDEFISSVASVGNIPGKIHSWYLFSEFGLLIYSMTKNRYCERIGRQHKSNNVMFVVDLKRVMYYQKCYDPDCRGFRSSSRPIPIHLFSNPSVVGSSGMSNDIQPVDDKWGHQPDDNSKSNFLQYEDTVEDNSSDSWWLEAIKVLEDVESQQNATELSPKQEYDGDDEWWLAVERTASQIELTYNSTNSEC 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04397 629 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 43 591 IPR044917 GO:0003887|GO:0003896|GO:0042276
Vifa1g04397 629 Pfam Herpesviridae UL52/UL70 DNA primase 463 522 - -
Vifa1g04397 629 MobiDBLite consensus disorder prediction 27 70 - -
Vifa1g04397 629 Coils Coil 35 55 - -
Vifa1g04397 629 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04397 Vifa-Chr1 683783466 683790088 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04397 K22761 - gmx:100789800 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04397 1 683783466 683790088 Vifa1g04397 1 683783466 683790088 ECH