Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04359 ATGCCTTGCTCTTCATCGACTCCAATCACAACTGGTAGCGATAGCAGTAACACCAACAACAACGAGAAGAAGAATACGAAAAACGATGGCTCTTCTCTCCGCGATTTCAAACTGAACGAATCTACCTTTTTAGCTTCACTCATGCCGAAGAAAGAAATCGGAGTAGATCGGTTCCTTGATTCTCACCCTAATTACGATGGTCGCGGTGCTCTCATCGCGATTTTCGATTCTGGCATAGACCCGGCTGTTGATGGATTGCAGGTTACATCAGATGGGAAACCAAAAATTCTTGATGTCATTGATTGTACTGGGAGTGGTGATATTGATACCTCAAAGGTCGTGAAGGCTGATGCACATGGTTGTATTCGTGGGGTATCAGGGGCATCTTTGGTTATCAATACTTCATGGAAAAATCCTTCTGGTGAATGGCACGTGGGTTATAAATTGGTTTACGAGCTCTTTACAGAAGAGTTGACCTCTCGTTTGAAGACAGAAAGAAAGAAAAAATGGGATGAGAAAAACCAGGAGGAAATTGCAAGGGCTGTAAAACAACTTGATGATTTTGATCAGCAACACATCAAGGTTGAGGATGGAAAGCTTAAGAGGGTTCGTGAAGATCTGCAACATAGGCTTGATCTTTTGAGGAGGCAATCTGAGAGTTATGACGATAAAGGACCCATTATAGATGCTGTTGCCTGGCATGATGGGGAGGTCTGGAGGGCTGCCCTTGACACACAAAGCCTTGAAGATGATCCGAATTGTGGAATGCTTGCTAATTTTGTGCCTTTAACTAATTATAGGATTGAGAGGAAATATGGCGTCTTCAGCAAATTAGATGCTTGTACATTTGTTGTTAATGTCTATAATGATGGGAATGTTTTAAGTGTTGTAACAGACTGTTCTCCCCATGCCACCCATGTTGCTGGTATATCTGCTGCTTTCCACCCAAAGGAGCCTTTGTTGAATGGAGTTGCACCTGGCGCACAATTAATATCTTGTAAAATTGGGGATGCCCGCTTAGGTTCAATGGAGACAGGAACCGGGTTGATTCGGGCATTGATAGCTGCTGTGGAGCATAAATGTGATCTCATTAATATGAGTTATGGTGAAGCAACTTTACTGCCCAACTATGGACGTTTTGTTGACCTTGTGAATGAGGCGGTCAACAAGCATCGTCTGATATTTGTAAGCAGTGCTGGTAATAGTGGTCCAGGATTGAGCACTGTTGGTGCACCTGGTGGTACGTCTTCGAGTATCATCGGTGTCGGTGCATATGTTTCTCCGGCAATGGCTGCTGGTGCTCATTGTGTTGTTGAACCTCCTTCAGAGGGGCTTGAATACACTTGGTCTAGCCGTGGGCCAACGGCTGATGGAGACCTTGGTGTCTGTATAAGTGCTCCTGGTGGTGCTGTTGCTCCTGTTCCTAAGTGGACTCTTCAACGGCGCATGCTCATGAACGGGACATCAATGGCATCACCATCAGCCTGTGGAGGAACTGCATTGCTTATAAGTGCAATGAAGGCTGAGGGAATTTCTGTGAGTCCATATAGTGTGAGGAAGGCTCTTGAGAATACCTCAGTTCCCATAGGTGATTTGCCTGAAGATAAATTATCCACCGGACAAGGGCTTATGCAAGTTGACAAGGCTTTTGAATATATACAGAAGTGTCAAAACTTTCCATGTGTTCAGTATCAGATAAATGTCCATCAATCTGGAAAAACAAGTCCTACATCACGAGGCATCTACCTGAGGGAGCCTAGTGCTTGTCGACAGACTACTGAGTGGATAGTGCAAGTTAATCCCAAGTTTCATGAAGATGCCAGCAACTTTGAGGAAAAGATTCCTTTTGAGGAATGCATTGAGTTATATTCTACTGAAAAAACTGTTGTGAAGACCCCTGACTATCTCTTGCTCACTCATAATGGTCGTAACTTCAATGTAGTTGTGGATCCTTCCAATCTATCTGATGGTCTTCACTACTATGAAGTCTATGGTATTGACTGCAAAGCGCCATGGCGTGGTCCTATTTTCAGAATTCCTATTACCATAACAAAGGCCAAGGCTGTAACTAACCAGTCTCTACAAGTTTCATTTTCAAATATGTTATTCCAGCCAGGGCATATAGAAAGGAGATATATAGAAGTGCCACATGGTGCATCTTGGGCTGATGTAACAATGAAAATGTCAGGGTGTGACATACCTCGAAAGTTTTTTGTGGATGCCGTTCAGATGTGTCCATTGCAAAGACCTCTGAAATGGGAAAAGGTGATAACTTTTGCTTCTTCGGGTGCCAAAAGCTTTACCTTTAAGGTAGTAAGTGGTCAGACATTGGAACTGGTCATTGCTCAGTTTTGGTCAAGTGGCATAGGGAGTCATGAAACTGCCAGTGTGAATTTTGAGGTTGTTTTTCATGGGATAAAAGTTAATCATGAAGAACTTATACTTGATGGAAGTGAAGCACCGGTCAGAATTGATGCTGAAACATTAGTGGTATCCGAGGAACTTGCTCCAGTGGCTATTCTAAACAAGATTAGGGTTCCTTATCGACCAATAGATTCTAAGATTTGTGCACTCTCAGCAGATCGTGATAAACTTCCATCTGGAAAACAGATACTGGCGCTGACTTTGACCTACAAGGTCAAATTGGAAGATGGAGCTCAAGTAAAGCCTCACATACCATTGCTAAATGACCGGATATATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCCAACAAACGCGTGTATTCAAGTGGAGATGCCTATCCAAGCTCTTCAAATCTTCCCAAGGGAGAATATAATTTGCAGCTCTATTTGAGGCATGACAATGTGCAAGTTTTGGAAAAGATGAGGCATTTGGTGTTATTCCTTGAGAAAAATTTGGAGGAGAAGGATGTTATGCGGTTAAATTTTTTCTCTCAACCTGATGGCCCACTGTTGGGAAATGGTTCCTTTAAGTCCTCATTATTAATTCCAGGTATAAAAGAAGGATTATATCTTGGTCCACCGCAAAAAGAAAAGCTTCCCAAGAGTTCTCAACAAGGATCTGTATTGGTTGGGGCCATTTCATATGGGAAACTATCATTTGCTGATCAGGAGGAGAAAAAAAATCCCGAAAAGCACCCTGCTTCATATCGAATTTCTTATGTAGTTCCTCCAAATAAGGTTGATGAGGATGACAAAGGAAAAGGTTCTTCCTTATCTACCAAAAAGACTGTCTCTGAACGTATAAAAGAAGAGGTAAGGGATGCAAAAATAAAAGTTCTTGGAACCCTAAAACAGGAAAGTGATGAAGAGCGCTCGGAGTGGGAAGAGCTAGCTGCATCGCTAAAATCGGAATATCCAAAGTACACTCCGTTGCTTGCAAAGATTTTGGAAGGTTTAGTTTCTAGGAGTAATATCAAAGATAAAATCCATCATGATGAGGAGGTGATTGATGCAGCAAATGATGTGATTGACAGTATCGACAGGGAAGAGTTAGCTAAATTTTTTGCACTAAAAAATGATCCAGAAGATGATGAAGCAGAGAATACCAGGAAAAAGTTCGAGTCTACCCGAGACCAGTTAGCACAGGCACTGTATGAAAAGGGGCTCGCCCTGGCAGATATTGAATCTTTAAAGGATTTGGATGCTACAGAAGGTGCAAACAAAGGTGTGGACAGTGAGCAATCTACAGATGATGGCAGTCATCCAGACTTGTTTGAAGAGAATTTTCTAGAACTGAAGAAATGGGTTGATGTAAAGTCATCTAAATATGGAATCCTCACAGTAACACGTGAGAGGCGTTCTCAGAGGCTTGGGACAGCATTAAAGGTACTGTGTGACATAATTCAAAATGATGCAGAGACTGCCAAGAAAAAATTCTATGAACTAAAGCTCTCATTGCTTGATGAGATTGGGTGGAAAGATTTAGCAACATACGAGAGACAGTGGATGCTTGTGCGTTTCCCTCCAACCTTACCCCTTTTCTAG 3981 0.422 MPCSSSTPITTGSDSSNTNNNEKKNTKNDGSSLRDFKLNESTFLASLMPKKEIGVDRFLDSHPNYDGRGALIAIFDSGIDPAVDGLQVTSDGKPKILDVIDCTGSGDIDTSKVVKADAHGCIRGVSGASLVINTSWKNPSGEWHVGYKLVYELFTEELTSRLKTERKKKWDEKNQEEIARAVKQLDDFDQQHIKVEDGKLKRVREDLQHRLDLLRRQSESYDDKGPIIDAVAWHDGEVWRAALDTQSLEDDPNCGMLANFVPLTNYRIERKYGVFSKLDACTFVVNVYNDGNVLSVVTDCSPHATHVAGISAAFHPKEPLLNGVAPGAQLISCKIGDARLGSMETGTGLIRALIAAVEHKCDLINMSYGEATLLPNYGRFVDLVNEAVNKHRLIFVSSAGNSGPGLSTVGAPGGTSSSIIGVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVPKWTLQRRMLMNGTSMASPSACGGTALLISAMKAEGISVSPYSVRKALENTSVPIGDLPEDKLSTGQGLMQVDKAFEYIQKCQNFPCVQYQINVHQSGKTSPTSRGIYLREPSACRQTTEWIVQVNPKFHEDASNFEEKIPFEECIELYSTEKTVVKTPDYLLLTHNGRNFNVVVDPSNLSDGLHYYEVYGIDCKAPWRGPIFRIPITITKAKAVTNQSLQVSFSNMLFQPGHIERRYIEVPHGASWADVTMKMSGCDIPRKFFVDAVQMCPLQRPLKWEKVITFASSGAKSFTFKVVSGQTLELVIAQFWSSGIGSHETASVNFEVVFHGIKVNHEELILDGSEAPVRIDAETLVVSEELAPVAILNKIRVPYRPIDSKICALSADRDKLPSGKQILALTLTYKVKLEDGAQVKPHIPLLNDRIYDTKFESQFYMISDSNKRVYSSGDAYPSSSNLPKGEYNLQLYLRHDNVQVLEKMRHLVLFLEKNLEEKDVMRLNFFSQPDGPLLGNGSFKSSLLIPGIKEGLYLGPPQKEKLPKSSQQGSVLVGAISYGKLSFADQEEKKNPEKHPASYRISYVVPPNKVDEDDKGKGSSLSTKKTVSERIKEEVRDAKIKVLGTLKQESDEERSEWEELAASLKSEYPKYTPLLAKILEGLVSRSNIKDKIHHDEEVIDAANDVIDSIDREELAKFFALKNDPEDDEAENTRKKFESTRDQLAQALYEKGLALADIESLKDLDATEGANKGVDSEQSTDDGSHPDLFEENFLELKKWVDVKSSKYGILTVTRERRSQRLGTALKVLCDIIQNDAETAKKKFYELKLSLLDEIGWKDLATYERQWMLVRFPPTLPLF 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04359 1326 MobiDBLite consensus disorder prediction 1055 1074 - -
Vifa1g04359 1326 PRINTS Subtilisin serine protease family (S8) signature 67 86 IPR015500 -
Vifa1g04359 1326 PRINTS Subtilisin serine protease family (S8) signature 299 312 IPR015500 -
Vifa1g04359 1326 PRINTS Subtilisin serine protease family (S8) signature 486 502 IPR015500 -
Vifa1g04359 1326 Gene3D - 1074 1326 IPR046939 -
Vifa1g04359 1326 ProSitePatterns Serine proteases, subtilase family, serine active site. 487 497 IPR023828 -
Vifa1g04359 1326 ProSiteProfiles Serine proteases, subtilase domain profile. 52 550 - -
Vifa1g04359 1326 Gene3D - 111 182 - -
Vifa1g04359 1326 PANTHER PEPTIDASE S8 44 950 - -
Vifa1g04359 1326 SUPERFAMILY Subtilisin-like 52 551 IPR036852 GO:0004252|GO:0006508
Vifa1g04359 1326 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g04359 1326 Pfam Tripeptidyl peptidase II 830 1014 IPR022229 -
Vifa1g04359 1326 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g04359 1326 MobiDBLite consensus disorder prediction 1056 1074 - -
Vifa1g04359 1326 Coils Coil 204 224 - -
Vifa1g04359 1326 FunFam Tripeptidyl-peptidase 2 111 172 - -
Vifa1g04359 1326 Gene3D Peptidase S8/S53 domain 227 560 IPR036852 GO:0004252|GO:0006508
Vifa1g04359 1326 Coils Coil 1096 1116 - -
Vifa1g04359 1326 Gene3D - 562 698 IPR046940 -
Vifa1g04359 1326 FunFam Tripeptidyl-peptidase 2 563 694 - -
Vifa1g04359 1326 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 47 529 IPR034051 GO:0006508|GO:0008240
Vifa1g04359 1326 FunFam Tripeptidyl-peptidase 2 homolog 227 560 - -
Vifa1g04359 1326 Pfam Subtilase family 67 526 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04359 Vifa-Chr1 677076378 677103103 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04359 K01280 - gmx:100798235 2252.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04359 1 677076378 677103103 Vifa1g04359 1 677076378 677103103 ECH