Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04343 ATGTTATCTTCTTCGCTCTCATTCCTTCACTCTTTCACTTTCCCCTCTTGTTCTTCGTTCACAATTCCATCTCCAAATCCCAATTCTCCGTCTTCTCTTTCCTTTGTGGTTGAAGTCAAATCAAGTTCCCGAAGGGAAGACAGAACTGCTCGCCATGTTCGTATCCGGAAGAAGGTTGAAGGAACAACCGAACGACCAAGATTGTCTGTCTTCCGATCCAACAAGCACCTCTTTGTCCAGGTGATTGATGACACCAAGATGCATACACTTGCTTCAGCTTCCACAATGCAGAAGAAACTTGCTGAAGAGTTCAACTACACCTCTGGCCCTACAATTGAAGTAGCAAAGAGGGTGGGTGAGATCATTGCGAGATCCTGTCTGGCGAAGGGAATCACAAAAGTTGTCTTTGATCGTGGTGGTTACCCGTACCATGGCCGTGTTAAAGCAATCGCTGATTCGGCTCGCGAACATGGCCTGGACTTCTAA 486 0.4671 MLSSSLSFLHSFTFPSCSSFTIPSPNPNSPSSLSFVVEVKSSSRREDRTARHVRIRKKVEGTTERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQKKLAEEFNYTSGPTIEVAKRVGEIIARSCLAKGITKVVFDRGGYPYHGRVKAIADSAREHGLDF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04343 161 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 40 161 IPR005484 GO:0003735|GO:0005840|GO:0006412
Vifa1g04343 161 CDD Ribosomal_L18_L5e 55 159 - -
Vifa1g04343 161 FunFam 50S ribosomal protein L18 42 161 - -
Vifa1g04343 161 NCBIfam 50S ribosomal protein L18 45 161 IPR004389 GO:0003735|GO:0005840|GO:0006412
Vifa1g04343 161 Hamap 50S ribosomal protein L18 [rplR]. 43 161 IPR004389 GO:0003735|GO:0005840|GO:0006412
Vifa1g04343 161 Gene3D - 43 161 - -
Vifa1g04343 161 SUPERFAMILY Translational machinery components 44 159 - -
Vifa1g04343 161 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 43 161 IPR005484 GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04343 K02881 - gmx:100306308 231.106