Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04335 ATGGAGGACAAAGCATCATCATCGGCAAAACTAAAAACTGTTGATTTGGATGTACCTCTTCATACAATAGGATTTGAGTTTGAAGATATATCAGCAGAGAAAGTTTCTGGCAATCTTCATCTTACCCAAAAGTGTTGTCAGCCATATAACATGCTTCATGGAGGTGTATCAGCATTGATTGCAGAAGCCCTAGCCAGTATTGGAGCACATATTGCTTGTGGTTATAAAAGGGTTGTAGGAATTCAACTTAGCATCAACCATTTGAAACCAGCTCTTATTGGTGACTTTATCCATGCTGAAGCCACACCTTTGACAGTTGGCAAATCTATCCAGGTTTGGGATGTGAGAATCTGGAAGATTGATTCTTCAAACTCACAAAATAGATTGTTGATAGCATCTTCTAGAGTTACTCTTAAAACCAACATGCCCGTTCTAGAAAATGCAAAAGATGTCGGCGATTGGCTAAAGAAGCATGCAAAATTGTGA 486 0.3889 MEDKASSSAKLKTVDLDVPLHTIGFEFEDISAEKVSGNLHLTQKCCQPYNMLHGGVSALIAEALASIGAHIACGYKRVVGIQLSINHLKPALIGDFIHAEATPLTVGKSIQVWDVRIWKIDSSNSQNRLLIASSRVTLKTNMPVLENAKDVGDWLKKHAKL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04335 161 NCBIfam hotdog fold thioesterase 21 138 IPR003736 -
Vifa1g04335 161 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 3 160 - -
Vifa1g04335 161 CDD PaaI_thioesterase 22 139 - -
Vifa1g04335 161 Gene3D Hotdog Thioesterase 4 141 - -
Vifa1g04335 161 FunFam 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 6 141 - -
Vifa1g04335 161 Pfam Thioesterase superfamily 50 121 IPR006683 -
Vifa1g04335 161 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 20 138 IPR029069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04335 Vifa-Chr1 673510441 673511411 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04335 K19222 - gmx:100527403 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04335 1 673510441 673511411 Vifa1g04335 1 673510441 673511411 ECH