Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04330 ATGAAGGGCAGAGGAGACAGAATGGTGCAAACTAAGGATGGAACTGTTGTTGCAGTAGCTTCTGCTTTTTCTGGCCACAAGCAAGCTATAAAGGATAGAGACCATAAATTTTTAAGAAAAGCAGTTGAAGAAGCATATAAAGGTGTAGATTGTGAAGATGGAGGTCCTTTTGGTGCTGTTATTGTTTTTAATGATGAAGTTGTTGCTAGTTGTCACAATATGGTTCTCAGGAACAATGACCCTACTGCTCATGCTGAAGTCACTGCAATAAGAGAGGCTTGTAAGAAACTGAAGCAGATAGAACTCTCTGATTGTGAAATATATGCTTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCTATTCAACTTTCACGTGTTAAGAGGTTGGTTTATGGAGCAAAAGCAGAAGCCGCAATTGCGATTGGTTTTGATAATTTTATAGCTGATGCATTACGAGGAACTGGATTTTATCAAAAAGCACATTTGGAAATTAAAAGAGCTGATGGCAAAGAGGCCATTATTGCTGAAGAAGTGTTTGAGAAAACTAAGGAAAAATTTCGAATGTATTAA 570 0.3825 MKGRGDRMVQTKDGTVVAVASAFSGHKQAIKDRDHKFLRKAVEEAYKGVDCEDGGPFGAVIVFNDEVVASCHNMVLRNNDPTAHAEVTAIREACKKLKQIELSDCEIYASCEPCPMCFGAIQLSRVKRLVYGAKAEAAIAIGFDNFIADALRGTGFYQKAHLEIKRADGKEAIIAEEVFEKTKEKFRMY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04330 189 Gene3D Cytidine Deaminase, domain 2 25 188 - -
Vifa1g04330 189 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 84 121 IPR016192 GO:0008270|GO:0016787
Vifa1g04330 189 FunFam tRNA-specific adenosine deaminase 32 188 - -
Vifa1g04330 189 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 33 132 IPR002125 -
Vifa1g04330 189 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 32 144 IPR002125 -
Vifa1g04330 189 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 27 136 - -
Vifa1g04330 189 CDD nucleoside_deaminase 38 144 - -
Vifa1g04330 189 SUPERFAMILY Cytidine deaminase-like 29 146 IPR016193 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04330 Vifa-Chr1 672212259 672214903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04330 - - gmx:100500436 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04172 4 1327783137 1327786216 Vifa1g04330 1 672212259 672214903 PCT