Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04323 ATGTATGTTACTCCCGTGTGTAGTGTAGAACATGTATCTCGGTCAAACCGTGGCCATAAAAGTCAACACCATCACGAGATGAATATCAAGTATCTGCTGGTTGTTATATGTCTCTGGATTTGGTCTCAATCTTTGGTGTTTACAATTTCTGATGATGGGTTGATGAGAATTACTCTAAAAAGGAGAAATTTGGACTTTGAAAGTCTTAATTCTGCAAGAATCAAAGAGGCAATTCATCTCAAAGATTTTAAGAGTTTTGATCAAAATGGTTCTGAAAAAGAGGTTGTTGTGTATGTTAAGAATTACTTTGATGTACAATATTTTGGTGAAATTGGTATTGGTACACCACCACAGTACTTCAATGTTGTTTTTGACACTGGTAGCTCGAATCTCTGGATTCCATCTTCCAAATGCATTTTCTCAATTGCTTGCTATTTTCATTCCAAATATAGCTCAAAGATATCTAGCACATATAAAGAAATTGGAGTACCTTGTGAAATTCCTTATGATCAAGGATACATTTATGGATTCTTCAGTCAAGACAATGTAAAACTTGGGGATATTATTATCAAAGATCAAGAATTTTCTGAGATTACAAGAGAAGGAAATTTCGCACTTTTAGCTCTTCCATTTGATGGTATACTTGGACTTGGATTCCAGGATATTTCAGTTGGAAGAGTCACACCAGTGTGGTATAATATGATAGAACAAGGACAGGTATTGGACAAAGTTTTCTCTTTTTGGCTAAATAAGGATCCATTGGCACAAATTGGGGGTGAGATTGTGTTTGGTGGTATGAACAAGAGGCATTTTAAAGGTGACCACACTTACTTTCCAATATCTCAAAAGGGTTATTGGCAGATTGAAGTGGGAGATATACTACTTGCAAATAATACAACAGGTTTATGTAAGCGTGGATGTGCTGCAATAGTGGACTCAGGAACATCTTTAATCGCCGGTCCAACTGGTGTTGTGACTCAAATTAACCATGCCATTGGAACAGAAGGATATGTTAGTTTTGAGTGTAAAAACATTGTCCATAACTACGGAAATTTGATATGGGAATCCTTGATTTCAGGATTAAATCCTGATATCTTATGTGCGGACATTGGACTTTGTTCAAATAACGAATTTCAAAGATCGAACGATGTTATTGAAACAGTGGTGCATAATGAAACTCGCGATGGATCGCAAACAAAGGAGAGCCCCTTTTGTAGTTTTTGCAATATGATTGTCCTTTGGATTCAAGTTCAGATTACGCAAAGCAACGTAAAGGAAAAAGTATTAAAACACGTGGACGAGCTATGCGAGAGGCTCCCGAATCCAGTTGGACAATCATTTATAAACTGCAGCAGTGTCTCTGATCTGCCAAATATTACATTCACAATTGGAAGCAAATTGTTTCATCTCTCTCCAGAACAGTATATTCTTAAAGTTAATGATGATAAAGATTGTTCTCCTGTGTGCTATAGTGGTTTTGTTGCTCTAGATGTGCCTTCCCCACAGGGTCCCCTCTGGGTTTTTGGAGACATTTTCTTGCAGGCATATCACACAGTGTTTGACTATGATGATGTTAACTGGTTTAAGAGAGTATGTATTGCTGAAATACACAACAACAATTAG 1623 0.3691 MYVTPVCSVEHVSRSNRGHKSQHHHEMNIKYLLVVICLWIWSQSLVFTISDDGLMRITLKRRNLDFESLNSARIKEAIHLKDFKSFDQNGSEKEVVVYVKNYFDVQYFGEIGIGTPPQYFNVVFDTGSSNLWIPSSKCIFSIACYFHSKYSSKISSTYKEIGVPCEIPYDQGYIYGFFSQDNVKLGDIIIKDQEFSEITREGNFALLALPFDGILGLGFQDISVGRVTPVWYNMIEQGQVLDKVFSFWLNKDPLAQIGGEIVFGGMNKRHFKGDHTYFPISQKGYWQIEVGDILLANNTTGLCKRGCAAIVDSGTSLIAGPTGVVTQINHAIGTEGYVSFECKNIVHNYGNLIWESLISGLNPDILCADIGLCSNNEFQRSNDVIETVVHNETRDGSQTKESPFCSFCNMIVLWIQVQITQSNVKEKVLKHVDELCERLPNPVGQSFINCSSVSDLPNITFTIGSKLFHLSPEQYILKVNDDKDCSPVCYSGFVALDVPSPQGPLWVFGDIFLQAYHTVFDYDDVNWFKRVCIAEIHNNN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04323 540 PRINTS Pepsin (A1) aspartic protease family signature 506 521 IPR001461 GO:0004190|GO:0006508
Vifa1g04323 540 PRINTS Pepsin (A1) aspartic protease family signature 259 272 IPR001461 GO:0004190|GO:0006508
Vifa1g04323 540 PRINTS Pepsin (A1) aspartic protease family signature 113 133 IPR001461 GO:0004190|GO:0006508
Vifa1g04323 540 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Vifa1g04323 540 ProSiteProfiles Saposin B type domain profile. 401 442 IPR008139 -
Vifa1g04323 540 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 57 534 IPR001461 GO:0004190|GO:0006508
Vifa1g04323 540 SUPERFAMILY Saposin 339 440 IPR011001 -
Vifa1g04323 540 Gene3D Acid Proteases 55 265 IPR021109 -
Vifa1g04323 540 FunFam Lysosomal aspartic protease 93 335 - -
Vifa1g04323 540 Pfam Saposin-like type B, region 1 403 440 IPR007856 GO:0006629
Vifa1g04323 540 Pfam Eukaryotic aspartyl protease 106 524 IPR033121 -
Vifa1g04323 540 Gene3D Acid Proteases 266 525 IPR021109 -
Vifa1g04323 540 ProSiteProfiles Peptidase family A1 domain profile. 107 534 IPR033121 -
Vifa1g04323 540 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 309 320 IPR001969 GO:0004190|GO:0006508
Vifa1g04323 540 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 122 133 IPR001969 GO:0004190|GO:0006508
Vifa1g04323 540 Gene3D - 337 440 - -
Vifa1g04323 540 SUPERFAMILY Acid proteases 35 524 IPR021109 -
Vifa1g04323 540 ProSiteProfiles Saposin B type domain profile. 337 377 IPR008139 -
Vifa1g04323 540 Pfam Saposin-like type B, region 2 341 373 IPR008138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04323 Vifa-Chr1 670591874 670595534 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04323 K08245 - gmx:100500551 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04323 1 670591874 670595534 Vifa1g04323 1 670591874 670595534 ECH