Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04271 ATGCGAATCTTCATTCTCCGCATCTCCAATTTCATAAACCAAAATCTCAAAAATCCACAATGGATTCATCACCACCAACACAACCCCAATTTCAACCCCATCAGAGGAATGTCCCAATCCACCTCAATCCCCAAAAAACAACTACGAATTCGCGACCACGGCTACGACAATTACATGGAGATCGAGAAGAAAACCCGAAAAGTTCTCAAATTCCAGAACCTCATTCTCTCTGAACCCAATCAATCAATCCCAATCCCTCGGCTCGAAACCCTAGCTCATCGTATCGGCTTCACGCGCCATGAAGCCAGCGCGTTTCTTCTCAAATTCCCGCACGTCTTCGAAATCTTCGAGCACCCTGTTCAGCGTATCCTCTTCTGCAGGTTGACCCGGAAGGCCATTCTTCAGATTGAACACGAGCGGAATGCACTTGCAGATCAAGTCTCGCGAGCTGTCACGCGCCTCCGTAAGCTGCTTATGATGTCCAATGGGCTTCGATTACGCCTTGAGCATGTGAGGATTGCGCGATCGGCACTTGGCTTGCCGGATGATTTTGAATACTCGGTTGTTTTGAGGTATCCCGAATTTTTTCGGTTAATTGATGCTAAAGAAACTAGGAATAAGTATATTGAGCTTGTTGAATTTGACCCTGAGTTAGGAATATGTGCAATTGAAGATGCTAGGGAGAGAGTTTATAGAGAGAGGGGTAGTGATGCTGAAGATGTTAGGTTTTCTTTTTTGATTGATTTTCCACCTGGTTTTAAGATAAGTAAGTATTTTAGGATTGCGATGTGGAAGTGGCAAAGGCTACCTTATTGGTCACCTTATGAAGCTGTTTCTGGGTATGATTTGAGGTCGATTGAGGCGCAGAAGAGAATGGAGAAAAGGGCTGTTGCCACCATTCATGAATTGTTATCCTTGACTGTGGAGAAGAAGATTACTTTGGAGAGGATTGCGCATTTTCGGATGGCAATGGACTTGCCGAAAAAGTTGAAGGAATTTTTGCTTCAGCATCAGGGGATTTTCTATGTATCCACCAGAGGGAATCATGGGAAGCTTCACACTGTTTTTCTTAGGGAGGCTTATAGGAAAGGTGAATTGGTTGAGCCTAATGATTTGTATTTGGCGCGGCGGAAGCTTGCCGAGCTTGTGATTTTGAGCCCCCGGAAAGCTAAGGTTGATAGGGAGTTGGTTGGGTATAGGAGGAGCAAGTTAGATGATGAAATGGGGCAAGTAACAAGAGCATATGTTGAGGATGCTTGTGAAGACTTTAAAGGTGGAAATGGTGTAGGACAAAGTGAGGATGCAGAAGATGATTTGTCATCAGATATTGGTTCTGAGGTTGATTCCGGAGATGACAATGATGATTTTGATGGTAGTGTATCAATGCAAAGGAAATCACATGAGTGA 1407 0.4421 MRIFILRISNFINQNLKNPQWIHHHQHNPNFNPIRGMSQSTSIPKKQLRIRDHGYDNYMEIEKKTRKVLKFQNLILSEPNQSIPIPRLETLAHRIGFTRHEASAFLLKFPHVFEIFEHPVQRILFCRLTRKAILQIEHERNALADQVSRAVTRLRKLLMMSNGLRLRLEHVRIARSALGLPDDFEYSVVLRYPEFFRLIDAKETRNKYIELVEFDPELGICAIEDARERVYRERGSDAEDVRFSFLIDFPPGFKISKYFRIAMWKWQRLPYWSPYEAVSGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMDLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYRKGELVEPNDLYLARRKLAELVILSPRKAKVDRELVGYRRSKLDDEMGQVTRAYVEDACEDFKGGNGVGQSEDAEDDLSSDIGSEVDSGDDNDDFDGSVSMQRKSHE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04271 468 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 37 405 IPR045040 GO:0003723
Vifa1g04271 468 MobiDBLite consensus disorder prediction 435 455 - -
Vifa1g04271 468 MobiDBLite consensus disorder prediction 424 468 - -
Vifa1g04271 468 Pfam Plant organelle RNA recognition domain 51 386 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04271 Vifa-Chr1 660890301 660891707 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04271 - - gmx:100782167 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04271 1 660890301 660891707 Vifa1g04271 1 660890301 660891707 ECH