Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04254 ATGGCTTCAAGAAATGGTGAAGAAGAGAAAGTTGAACTTGGCTTCAATGATGTTCATCATGAGACTAAGAAAAATAAGGATTGGATCCTTTTGTCCCTTAGAGTGGTTGCATTTTTTGCCACTACAGCTGCAACTCTTGTGATGGCACTCAACAAACAGACCAAGAGTTTTGTTGTTGGCACCATTGGTAACAATCCAATAACAGCTACTCTTTCTGCAAAGTTTAATCAAACTCCAGCTTTTGTGTTCTTTGTGATTGCAAATGGAAATGCTAGTCTTCATAACTTGGTGATGATAGCATTGGATGTATTAGGACCCCAATATGATTACAAAGGACTTCGTCTTGCATTGATTGCAATATTAGACATGTTAACTATGGCTCTAGCATCAGCCGGAGATGGAGCAGCGACATTCATGTCAGAATTAGGGAGAAATGGTAATTCACATGCAAGGTGGGTTAAGATATGTGACAAATTTGAAAGCTATTGCAGTAGAGGTGGTGGTGCACTCATTGCTTCTTTCATTGGCTTCATTCTTCTCTTGATTATAGCAGTGATGTCCATTGCTAAGCTTCTCAAGCCAAATCGCATTAACCATGCTGCCAGTCCTTGA 612 0.3987 MASRNGEEEKVELGFNDVHHETKKNKDWILLSLRVVAFFATTAATLVMALNKQTKSFVVGTIGNNPITATLSAKFNQTPAFVFFVIANGNASLHNLVMIALDVLGPQYDYKGLRLALIAILDMLTMALASAGDGAATFMSELGRNGNSHARWVKICDKFESYCSRGGGALIASFIGFILLLIIAVMSIAKLLKPNRINHAASP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04254 203 PANTHER CASP-LIKE PROTEIN 1U1 22 191 IPR044173 -
Vifa1g04254 203 Pfam Casparian strip membrane protein domain 26 179 IPR006702 -
Vifa1g04254 203 NCBIfam plant integral membrane protein TIGR01569 31 190 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04254 Vifa-Chr1 657820114 657821192 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04254 - - gmx:100792043 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04254 1 657820114 657821192 Vifa1g04254 1 657820114 657821192 ECH