Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04242 ATGGAAGTGCCGTTAGAGTCTGAGAAGAAAAAATCTTCCGAAGCTGTGAAAACCGTTTCAAGTGGTTCGATTTCTTCGAGAAAAAGAGTTGAGGCTCGGAACGTAACGGATTCAGGTTCAGTTAGTTCGAGTTCAGTACCGAGAAGAAACAGTACTGGAGGGTTAGCACAACGGTCTTCGTCTTCGTTATCGTTATCATCAGATGGAAGAACTAAAACTACTGTTAGAGATAAAACCATTTCTTCTTCGGTTACTGAACCAGTGCGAAGATCTCTCCCGGAGATTCGTCGGAGTTCGATTTCTGCTTTGCATGCTGGCAAGCCGGTTGCCGCCGCCTCGCCGGCGGGAACGAGGACACCGACCGTTTCTGGTTCGAGTTCTAGTAAGGCGGAAGTTGTTAAGAGGCCGTTAAGTAAGCCGGCGTTGCCGGTTTCTGCTTCTTCCTCCTCGTCGAGGAGAGTTGGTTCTTCGACTGTTGATGCTAGTGGCGGTGGTTCTGTTAGGAAGAGTGTGACGAAGGTTTCGTCGCCGTCGATGTCGGCACGGTCGCCGACTGTGTCCGGCGGGCTGAGACCGGGATCTGTGTCGTCTTCTTCGGAGAGGAGTTCTGGTTTGTCTGGAAGGAGGAAAGTGGGGACTCCTGATAGCCGGAATTCACGGTTTATTGTTCTTCCGCAGATTGAGATTAAGGCTAGTGATGATTTGAGACTGGATCTTAGGGGACACAGAGTTCGCAGTCTCACTGCTGGTGGATTAAACTTATCCTCAAATTTGGAGTTTCTCTATCTCCGTGACAATCTCTTGTCTACATTGGAAGGAGTAGAAATATTGACAAGAGTGAAGGTTCTTGATTTGAGTTTTAATGATTTTAAAGGGCATGGGTTTGAGCCTCTTGAGAGTTGCAAAGCACTGCAGCAACTCTATCTTGCTGGGAATCAAATCACATCATTGGCAAGTCTCCCGCAACTTCCCAATTTGGAGTTCCTCTCAGTAGCTCAAAATAAGTTGAAATCTCTCACTATGGCAAGTCAACCTCGACTCCAGGTGTTAGCTGCCAGCAAAAACAGAATTTCTACACTTACAGGTTTTCCGTATTTACCAGTTCTTGAGCATTTGCGAGTGGAGGAGAACCCTATACTGAAGATGCCTCATTTGGAAGCAGCATCAATATTACTTGTTGGGCCTACTTTAAAAAAATATAATGATAGAGATCTTTCTCGCGAAGAAATTGCAATAGCAAGACGATATCCTGCACATACCGCTTTGTGCATTAGAGATGGTTGGGAATTTGGTCGCCCTGAGCAAGCTGCAGAGTCAACTTTCCGCTTTCTAGTTGAGAAATGGAAGGATCATCTTCCACCTGGTTTTTTCCTCAAAGAAGCCTCAATAGATAAACCTTTGGAAGAAGATGTGTGCCACAGTCACTTTACATTTGTTCATGATGGTGCAATGAGTACAGACCCACCGTTAGTCTTAAAATATCAATGGTTTTGTGGTGATGTAACACTTTCAAATTTTGTCCGTATTCCAGAGGCCACTAATGAGTTTTACTTGCCAAAACACGCTGAGATTGGAAAAGTTCTGAAAGTGGAATGTATTCCCACTTTAGGAGAGACAGAATATCCTTCTATATTTGCCATCTCTTCCCGTGTTAAACCAGGGAGTGGAATTCCAAAGGTTTTAAACCTTGAAGTCCACGGGGAACTGATAGAAGGAAGTATCATCCGGGGTTGTGCTAAGGTTGCATGGTGTGGTGGGACTCCAGGAAAAGGTGTTGCTAGTTGGCTGCGGAGAAAGTGGAACAGTAGTCCAGTGGTCATTGTTGGGGCAGAAGATGATGAGTATCTGCCCACCATTGACGACGTTGATTCAAGTTTAGTTTTCATGTACACACCAGTAACAGAAGAAGGTGCCAAAGGAGAACCTCAATATAAATATACAGATTTTGTAAGAGCAGCACCCCCTTCAGTCAGTAATGTTAGAATAGTTGGAGATACTGTCGAAGGAATCACCATTAAAGGAACTGGTGATTATTTTGGTGGACGGGAGGGGCCTAGCAAGTTTGAGTGGCTACGAAAGAACAGGGATACTGGAGATTTTCTGTTAGTGTCTGCTGGTACATCTGATTATACCTTGACCAAAGAAGATGTTGGTTGTTGTCTGACTTTTATATACATACCGATTAATTTTGAAGGTCAGGAAGGAAAATCGTTGTCAGCGACATCCTCTGTTGTAAAACAAGCTCCGCCAAAAGTAACAAATGTCAAAATAATTGGTGATCTACGAGAGAATGGAAAAGTCACTGCAACTGGTACTGTAACTGGAGGAACTGAAGGATCTAGTAGAGTTCAATGGTACAAAACATATTTGCCAACTTTGGATGAAAGCAATCTTGAAGCATTAAGTACTTCTAAAATTGCTAAAGCATTTCGGATTCCTCTTGGAGCTGTTGGATGTTACATTGTTGCAAAATATACACCGATGACTCCTGATGGTGATCCCGGGGAACCAACATTTGTAATATCTGATAGAGCAGTTGAGACACTTCCCCCAAGCTTAAATTTCTTATCAATCATTGGAGATTACTGTGAGGATGGAATATTGACGGCTTCATATGGATATGTTGGAGGTCATGAAGGAAAAAGTATATACAATTGGTATTTTCACGAGGTTGAAGGTGATTTTGGTTCTCAGATACCGGGGGTTTCTGGACTTCTGCAGTATCGCATTACCAAAGAAGCTATTGGAAAATTCATCTCATTCCAGTGTACTCCTGTTCGGGATGATGGTGTTGTGGGTGACAAAAGAATTTGCATGGGCCAGGAACGCATTCGGCCTGGAAGCCCAAGATTGCTTTCTTTATGCACAGTTGGAAATGCAGTTGAAGGAACAACACTAAGAATTGAAAAAACATATTGGGGCGGTGAAGAGGGAGATTCAGTTTACCGCTGGCTTAGGACCAGTTCTGAGGGTGTCCAAAGTGAAATTATGGGAGCCACCACAGCATCATATATGCTCTCCATTGATGATATCGGTTTCTTTATTTCTGTTTCTTGTGAGCCTGTCCGAAGTGATTGGGCTCGCGGGCCCATTGTTCTCTCTGAACAAATTGGACCTATAATACCTGGTCCACCAACATGTCATACTTTGGAAATTCTTGGATCAATGATAGAAGGGCGGCGATTGAATTTCAATGCTGTGTATAGCGGAGGGGAGAGGGGAGAATGCACCCACCAATGGTTTAGGGTAAAAGACCATGGTCTACGAGAGAAAATAAAAACTCAAGCAGATTTTTTGGATTTGACTCTTGATGATGTTGGTGCCTACATTGAGCTTGTCTTCACACCTGTGTGCAAAGATGGAACTAAAGGCAACCCAAAGAATGTGGTATCTGATATGATTTCTCCTGCGGATCCTAAGGGAATAGAGCTCACAATTTCTGACTGTTGCGAAGACAGGCAGGTTACCCCATCTAGGATATATTTTGGTGGACATGAAGGAGTTGGAGAATATATTTGGTACAGGACAAAGATTAAGCTTGAAGGATCTGCACTACTAAATATATCTAATGCTTCTGACACTGAGATATGTGGGACAGAGCTAACGTATAAACCAACTCTTAAAGATGTTGGATATTTTTTGGCCTTGTATTGGGTGCCAACTCGTGTGGACAGTACTTGTGGAGAGCCTTTGGTTGCAATTTGCAACACCCCAGTTTCCCCTGCACCTCCAGTAGTTGCTAATGTATGCGTGAAAGAGTTGTCTTTGGGAATTTACTCTGGTGAAGGTGAATATTTTGGTGGATATGAAGGAGAAAGCCTTCTTAGCTGGTATAGAAAAGACAGTGAGGGGACTGTTGAGCTGATTAATGGAGCAAACTCTAGAACCTACAAAGTAACTGATTCAGATTACACTTTTCGTTTGTTGTTTGGATATACTCCAGTTCGTTCAGATTCAGTTGTGGGTGAACTCAAGTTATCTGATCCAACTGACATTGTTTTCCCAGAGCTTCCATATGCAGAAATGCTTGCTCTGACCGGAAAGGCAGTTGAAGGTGACTTACTTACTGCTGTTGAAGTGATTCCAAATAGTGAGATGCAGCAACATGTTTGGAGCAAGTACAAGAAAGATATAAGATACCAATGGTTTTGTTCATCAGAAGTGGGAGACAGTTTTTCATATGAGCCATTACCCAATAAAAGTTCTTGCTCATATAGGGTGCGGTTTGAGGATATTGGCCGTTGTTTAAAATGTGAATGTGTTGTAACTGATGTGTTTGGACGGTCGGGTGAGGTGGTATACATTGAGACTAGTCCTGTATTGCCAGGGATTCCTAGAATACACAAGCTGGAGATTGAGGGAAGGGGATTCCATACCAATCTCTATGCTGTCTGTGGCATTTATAGTGGTGGGAAAGAAGGCAAAAGCCGAGTCCAGTGGCTTAGATCAATGGTTGGAAGTCCCGATCTGATCTCCATACCAGGAGAAACGGACAGAATGTATGAAGCAAACGTTGATGATGTTGGGTATAGGTTGGTGGCCATCTACACTCCTGTCAGAGAGGATGGTGTAGAGGGCCAATCAGTTTCTGTATCCACAGATCCAATTGCAGTTGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAACCTTGATCTGGGATCAGTGAAATTTGAGGTATTGTGTGACAAAGACCAAACCTCGAAAAAGGTTTCATTAGGGGGCACATATGAAAGACGAGTTCTTGAGATTAACAGGAAAAGGGTGAAGGTGGTAAAGCCTGCCACCAAGACTTCTTTTCCAACAACAGAAATTCGTGGTAGTTATGCCCCTCCCTTTCATGTGGAGCTTTTCAGGAATGATCAACACCGTCTAAAAATTGTAGTGGACAGTGAGAATGAAGCTGACTTGATGGTGCAGTCCCGGCACATTCGGGATGTTATTGTTCTTGTGATTAGAGGACTTGCTCAACGATTCAACAGCACTTCCCTCAATTCTCTTCTCAAGATAGAGACATGA 5016 0.434 MEVPLESEKKKSSEAVKTVSSGSISSRKRVEARNVTDSGSVSSSSVPRRNSTGGLAQRSSSSLSLSSDGRTKTTVRDKTISSSVTEPVRRSLPEIRRSSISALHAGKPVAAASPAGTRTPTVSGSSSSKAEVVKRPLSKPALPVSASSSSSRRVGSSTVDASGGGSVRKSVTKVSSPSMSARSPTVSGGLRPGSVSSSSERSSGLSGRRKVGTPDSRNSRFIVLPQIEIKASDDLRLDLRGHRVRSLTAGGLNLSSNLEFLYLRDNLLSTLEGVEILTRVKVLDLSFNDFKGHGFEPLESCKALQQLYLAGNQITSLASLPQLPNLEFLSVAQNKLKSLTMASQPRLQVLAASKNRISTLTGFPYLPVLEHLRVEENPILKMPHLEAASILLVGPTLKKYNDRDLSREEIAIARRYPAHTALCIRDGWEFGRPEQAAESTFRFLVEKWKDHLPPGFFLKEASIDKPLEEDVCHSHFTFVHDGAMSTDPPLVLKYQWFCGDVTLSNFVRIPEATNEFYLPKHAEIGKVLKVECIPTLGETEYPSIFAISSRVKPGSGIPKVLNLEVHGELIEGSIIRGCAKVAWCGGTPGKGVASWLRRKWNSSPVVIVGAEDDEYLPTIDDVDSSLVFMYTPVTEEGAKGEPQYKYTDFVRAAPPSVSNVRIVGDTVEGITIKGTGDYFGGREGPSKFEWLRKNRDTGDFLLVSAGTSDYTLTKEDVGCCLTFIYIPINFEGQEGKSLSATSSVVKQAPPKVTNVKIIGDLRENGKVTATGTVTGGTEGSSRVQWYKTYLPTLDESNLEALSTSKIAKAFRIPLGAVGCYIVAKYTPMTPDGDPGEPTFVISDRAVETLPPSLNFLSIIGDYCEDGILTASYGYVGGHEGKSIYNWYFHEVEGDFGSQIPGVSGLLQYRITKEAIGKFISFQCTPVRDDGVVGDKRICMGQERIRPGSPRLLSLCTVGNAVEGTTLRIEKTYWGGEEGDSVYRWLRTSSEGVQSEIMGATTASYMLSIDDIGFFISVSCEPVRSDWARGPIVLSEQIGPIIPGPPTCHTLEILGSMIEGRRLNFNAVYSGGERGECTHQWFRVKDHGLREKIKTQADFLDLTLDDVGAYIELVFTPVCKDGTKGNPKNVVSDMISPADPKGIELTISDCCEDRQVTPSRIYFGGHEGVGEYIWYRTKIKLEGSALLNISNASDTEICGTELTYKPTLKDVGYFLALYWVPTRVDSTCGEPLVAICNTPVSPAPPVVANVCVKELSLGIYSGEGEYFGGYEGESLLSWYRKDSEGTVELINGANSRTYKVTDSDYTFRLLFGYTPVRSDSVVGELKLSDPTDIVFPELPYAEMLALTGKAVEGDLLTAVEVIPNSEMQQHVWSKYKKDIRYQWFCSSEVGDSFSYEPLPNKSSCSYRVRFEDIGRCLKCECVVTDVFGRSGEVVYIETSPVLPGIPRIHKLEIEGRGFHTNLYAVCGIYSGGKEGKSRVQWLRSMVGSPDLISIPGETDRMYEANVDDVGYRLVAIYTPVREDGVEGQSVSVSTDPIAVEPDVLKEVKQNLDLGSVKFEVLCDKDQTSKKVSLGGTYERRVLEINRKRVKVVKPATKTSFPTTEIRGSYAPPFHVELFRNDQHRLKIVVDSENEADLMVQSRHIRDVIVLVIRGLAQRFNSTSLNSLLKIET 1671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04242 1671 Gene3D Ribonuclease Inhibitor 225 293 IPR032675 -
Vifa1g04242 1671 MobiDBLite consensus disorder prediction 1 15 - -
Vifa1g04242 1671 MobiDBLite consensus disorder prediction 16 88 - -
Vifa1g04242 1671 Pfam Leucine Rich repeats (2 copies) 303 340 IPR025875 -
Vifa1g04242 1671 ProSiteProfiles Leucine-rich repeat profile. 257 278 IPR001611 GO:0005515
Vifa1g04242 1671 FunFam 187-kDa microtubule-associated protein AIR9 293 421 - -
Vifa1g04242 1671 SUPERFAMILY Outer arm dynein light chain 1 236 390 - -
Vifa1g04242 1671 ProSiteProfiles Leucine-rich repeat profile. 303 324 IPR001611 GO:0005515
Vifa1g04242 1671 PANTHER EXPRESSED PROTEIN 629 736 - -
Vifa1g04242 1671 FunFam 187-kDa microtubule-associated protein AIR9 isoform X2 1338 1433 - -
Vifa1g04242 1671 MobiDBLite consensus disorder prediction 1 216 - -
Vifa1g04242 1671 Gene3D Ribonuclease Inhibitor 294 421 IPR032675 -
Vifa1g04242 1671 SMART LRR_sd22_2 277 300 - -
Vifa1g04242 1671 SMART LRR_sd22_2 255 276 - -
Vifa1g04242 1671 SMART LRR_sd22_2 301 322 - -
Vifa1g04242 1671 SMART LRR_sd22_2 323 344 - -
Vifa1g04242 1671 MobiDBLite consensus disorder prediction 142 206 - -
Vifa1g04242 1671 MobiDBLite consensus disorder prediction 116 132 - -
Vifa1g04242 1671 FunFam 187-kDa microtubule-associated protein AIR9 950 1033 - -
Vifa1g04242 1671 Gene3D - 1338 1432 - -
Vifa1g04242 1671 Gene3D - 476 542 - -
Vifa1g04242 1671 Gene3D - 954 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04242 Vifa-Chr1 655615211 655643804 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04242 - - gmx:100807099 2638.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04242 1 655615211 655643804 Vifa1g04242 1 655615211 655643804 ECH