Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04233 ATGGAGGAAGAAGAAATCGAGAAGAGAGCTGTGAGAATATTCGTCGGAGGATTGGGTGAAGCCGTCACCACCGAAGACCTTCGCCGGCTATTCGAATCACTTGGCACCGTTCAATCAATCGAACCCATCCGAACCAAAGGTCGCAGCCTCGCATACCTCGACTTCCTCTCCGATCCTAAATCCCTTTCCAAACTTTTCAGCAAGTATAATGGGTGTGTGTGGAAAGGTGGAAAGCTTAGACTTGAAAAGGCTAAAGAGCACTACCTTGATCGGATGAAAAAAGAATGGGAAGAAGACAAGATTCTTAGTATCAAACCACCAGCTACTGAGATTACTACTCAAAAGGAGGTTTTGGTAAAGGAAAAGCCTACTTCAAGACGCATTTTGGATTCAACTGAAAAGCCTCTTAATATTTACTTCCCGAGATTAAGAACGGTGAAATCCATACCATTCAGTGGAACTGGCAAGCACAAATATAGTTTCCAGAATATCAAAGTTCCTCCTCTCCCTGTGCATTTTTGTGATTGTGAGGAACATTGTAGTCCTTTTATCCCTAAAAAGGAAAAGTTATCTATGAATACGGCAGCTGAAGCTGGTGGAATAAATGATGAAGAAATTAACATCATGAATGCTGTTATGAACAAGCTGCTTGAAAAAGAGAAGGTTTCTAACACCAAGCAACTTGGAAAGAAACATGATTCATTTAAATCTCCCGATGCTTTACCGGCTAATAAAGGTGAAGTAGATAGTGCAACAAAAGCTGGTGGTGATGATGATGATGATGTTGATGTTGATGTTGATGTTGATGTTGATGTTGATGTTGATGTTGATGATGATGGTGATGGTGATGGTGATGATGATGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGACGGTGATGGTGATGGTGATGGTGATGATGATGATGATGATGATGATGATGATGATGGTCTCATAATCAACATTGCAACGAAGAAAAAGAAAACAGCTTTAACAGGGACCCAAGAACTTGAAAAGATCTTGGAAAATCAGGAATGGTCCAATAAAACAAATATTGCAGAAGAAGAAACCATTGAAGTGCAGAAAAGGAGCAACAACAATCTTAACAAGGTAAAGAAGAGAAAACCACTTCCCAAATCAGAAAGCGACAACAATGAAGGTGTGTCTAGTGCCTCTGCTGGCAAGAGTAAAATGCAGACCCTTCTAGATGAGCTGGGATCTGGTGCGCAGCCTACGGAACCAGGATATGATCTTGGGGAATCGGGTAAAGTTTCATGGTCACAGAAGTCTTCATGGAGAGAACTTGTTGGTAAAGGAGGCAATGCTTCCTTTAGCGCCTCTCTCATATTGCCGAAGTTTGATTCTGGTAAAGATCAACAAAATTCTAATGGTTCTTGCACTTCTTCATCTACAAACGATGAAACTGAAGACATGGGAAGTGATGAATCTCAAGCTGAAGACGTGGAAAGTGATGAATCTCAACCTGAAGACGTGGAAAGTGATGAATCTCAACCTGAAGACATGGAAAGTGATGAATCTCAACCTGAAGACGCGGAAAGTGATGAATCCCAACCTGAAGACGCGGAAAGTGATGAATCTCAACCTGAAGACGCGGAAAGTGATGAATCTCAACCTGAAGACGCGGAAAGTGATGAATCTCAACCTGAAGATGCGGAAAGTGATGAATCTCAACCTGAAGATGCGGAAAGTGATGAATCTCAACCTGAAGATGTGGAAAGTGATGAATCTCAACCTGAAGACGTGGAAAGTGTCGAAACTGAAGACATGAAAAGTGATGAATCTCAACCTGAAGACATGGAAAGTGATGAATCTCAACCTTCCCACGCACAAGTGACAGAAGAGCCTGCTGAAGCTCAACCTACCAATGCACACGTAATAGAAGAGCCAGCTGAATCTCAACCCACCAATTCACAAGTGATAGAAGAACCTGCTGAAGCTCAACCTAAGACGGCACCGAAAATAACCGGCAGAGGTTCTTCATGGCTGCAAAAGGAATCCTGGACCCAACTGGTCAATAAGGATAATAATTCATTTAGCATTTCACAAATTTTACCTGACATCACTTTCCCCGAACAAACAGCCAAGGAACCCATTCTGTACCCTGCCTATTCCAATAATTGCAAGCATAATGGTGCTGATAAGAATACTAATAATGGATCTGTAATTGATGGCTTTAACTTAAGGGAGATTGTACGGGAAAAGAGTGCGCATACTGGCGCTGATGATATAGTTTCTGCTTCAGTAGCTGAGAAAACAGTTGAAACAAATTCAAGGGAAGGATCCAGTGCAAATGTTGAAATAGGAGAAACTTGCTCATTTATGAGAAGTGCTGCTTCTTTGAAAGAGTGGGCAAAAGCTAAAGCTGCTCTTAGTGGATCACTCAAAAGAAAACATAGTGAGAAATAA 2445 0.42 MEEEEIEKRAVRIFVGGLGEAVTTEDLRRLFESLGTVQSIEPIRTKGRSLAYLDFLSDPKSLSKLFSKYNGCVWKGGKLRLEKAKEHYLDRMKKEWEEDKILSIKPPATEITTQKEVLVKEKPTSRRILDSTEKPLNIYFPRLRTVKSIPFSGTGKHKYSFQNIKVPPLPVHFCDCEEHCSPFIPKKEKLSMNTAAEAGGINDEEINIMNAVMNKLLEKEKVSNTKQLGKKHDSFKSPDALPANKGEVDSATKAGGDDDDDVDVDVDVDVDVDVDVDDDGDGDGDDDDGGGGGGGGGGGGGDGDGDGDGDGDDDDDDDDDDDGLIINIATKKKKTALTGTQELEKILENQEWSNKTNIAEEETIEVQKRSNNNLNKVKKRKPLPKSESDNNEGVSSASAGKSKMQTLLDELGSGAQPTEPGYDLGESGKVSWSQKSSWRELVGKGGNASFSASLILPKFDSGKDQQNSNGSCTSSSTNDETEDMGSDESQAEDVESDESQPEDVESDESQPEDMESDESQPEDAESDESQPEDAESDESQPEDAESDESQPEDAESDESQPEDAESDESQPEDAESDESQPEDVESDESQPEDVESVETEDMKSDESQPEDMESDESQPSHAQVTEEPAEAQPTNAHVIEEPAESQPTNSQVIEEPAEAQPKTAPKITGRGSSWLQKESWTQLVNKDNNSFSISQILPDITFPEQTAKEPILYPAYSNNCKHNGADKNTNNGSVIDGFNLREIVREKSAHTGADDIVSASVAEKTVETNSREGSSANVEIGETCSFMRSAASLKEWAKAKAALSGSLKRKHSEK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04233 814 SUPERFAMILY RNA-binding domain, RBD 10 85 IPR035979 GO:0003676
Vifa1g04233 814 Gene3D - 1 89 IPR012677 -
Vifa1g04233 814 SMART rrm1_1 12 82 IPR000504 GO:0003723
Vifa1g04233 814 MobiDBLite consensus disorder prediction 347 437 - -
Vifa1g04233 814 MobiDBLite consensus disorder prediction 223 238 - -
Vifa1g04233 814 CDD RRM_NOL8 12 85 IPR034138 -
Vifa1g04233 814 MobiDBLite consensus disorder prediction 459 674 - -
Vifa1g04233 814 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 86 IPR000504 GO:0003723
Vifa1g04233 814 PANTHER TRANSCRIPTIONAL REGULATOR 667 813 - -
Vifa1g04233 814 MobiDBLite consensus disorder prediction 639 656 - -
Vifa1g04233 814 MobiDBLite consensus disorder prediction 258 288 - -
Vifa1g04233 814 MobiDBLite consensus disorder prediction 481 613 - -
Vifa1g04233 814 MobiDBLite consensus disorder prediction 460 480 - -
Vifa1g04233 814 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 56 IPR000504 GO:0003723
Vifa1g04233 814 MobiDBLite consensus disorder prediction 305 323 - -
Vifa1g04233 814 MobiDBLite consensus disorder prediction 223 323 - -
Vifa1g04233 814 MobiDBLite consensus disorder prediction 388 403 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04233 - - tpra:123883670 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04233 1 654301640 654307664 Vifa1g04233 1 654301640 654307664 ECH