Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04228 ATGGCTTGTATGAAATTGGGGTCTAAACCTGATGCATTCCAGCGGCAAGGGCAAGCATGGTTCTGCACGACCGGGCTTCCGAGCGATATAGTTGTTGAAGTTGGTGAGATGTCTTTCCATCTTCACAAGTTCCCTTTGCTCTCAAGAAGTGGGGTTTTGGAAAGATTGATAGCCAAAGCTTCTGAATCAGAGGAAGAATGTGGCATACCCCTTCACGATATTCCTGGTGGGGCCAAAACATTTGAACTTGTAGCGAAATTCTGCTACGGTGTGAAACTTGAACTAACGGCATCAAATGTAGTGAGCCTACGCTGTGCTGCTGAGCATCTTGAAATGACCGAGGAATATGGTGAAAGTAATCTTATTTCGCAAGCCGAAGGCTTTTTCAATCAAGTGGTTCTTCGAAGTTGGAAAGACTCCATGAGGGCACTTCAAACCTGTAGCGATGTTCTGTCCAAAGCCGAAGAACTCCACATTGTGAAAAGGTGCATTGAATCACTTGCAGCAAAGGCATCTACTGACCCAAATTTATTTGGGTGGCCGGTACTAGAGCGCGGTGGTCCCTTGCAGAGTCCTGGTGGAAGTGTTTTGTGGAATGGAATAAGTACCGGGGCAAGACCAAAGAATACAAGTTTAGATTGGTGGTATGAGGATGTCGCAAATTTGAGTTTACCAATTTATAAGAGGCTGATAGCTGTCATGGAATCTCGGGGCATTAGGCAGGAAATTATTGCTGGTTCTCATGCTTTCTATGCGAAAACGTACTTGCCTGGTTTAAATCGACGTAAGGTTTCCGGCGAGTCCACTACCCGGCTAACCCCGGCGACTTTAGGGTCTCCACTATCTGAAGAAGATCAAAAGATTCTTATAGAAGGAATCGATCAACTACTTCCAATGCAGAAAGGCTTGGTCCAAACAAAGTTCCTGTTCGGTCTACTTCGAACGGCCATGATTCTAAGAGTGAGCTTGTCTTGCATATCAAGTTTGGAGAAACGAATCGGGATGCAGCTCGATCAAGCTGCTTTGGAAGATCTCTTGATGCCAAGTTTTTCGTATTCAATGGAGACACTTTACAATGTTGACTGTGTGCAAAGAATTCTTGATCATTTCCTTGCAATGGATCAGGCTACAGGTGGTGCGTCTCCATCATGCTCAGTTGACGATGACGGCCAGTTGATTGGTTCACCGTCACTGACACCGATCACTATGGTCGCAAAACTGATTGATGGATACCTGGCAGAGGTTGCTCCCGATGTTAACGTAAAACTTCCCAAGTTTCAAACCCTTGCTGCTGCTGTTCCCGAGTATGCCAGGCCTTTGGATGACGGTTTATATCGCGCTATCGATATTTATTTGAAGTCTCATCCATGGTTGGTGGAGTCAGAGAGAGAGGAGTTATGCAGGCTAATGGACTGCCAGAAGCTCTCACTAGAAGCATGCACCCACGCCGCACAAAACGAGAGGCTACCCATTAGAATAATAGTTCAAGTTCTATTTTTCGAGCAGCTCCAGCTTCGAACATCAATCGCCGGTTGCTTTCTAGTTTCAGACAATCTCGACGGCTCAAGAAACTTAAGAAGCGGTTTAGTTGGATCCAACGACGGATGGGCATCCGCTGTAAAGGAAAACCAGGTATTGAAAGTCGGGATGGATAACATGAGGATGAGGGTATCCGAGCTCGAGAAAGAGTGCTCAAACATGAGGCAAGAGATCGAGAAACTGGGCGGTAAGACAAAAGGTTCGACGACAAGCGCTTGGGGAGCCGTGTCGAAGAAACTTGGGTTTAAGATAAAGTCTCAGATGTGTAGTGCTCAAGAAGGGTCTGTTAGCAAACAGAACAATGAGAATAATAAGGTTGAGAAGTTGAAGGACAGACATGTAAAGCATAATAGAAATTCTTCTATTAGTGACAAAGGATCAGTTTCTTCAAATGTTCCTTCTTAG 1944 0.4532 MACMKLGSKPDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVLERLIAKASESEEECGIPLHDIPGGAKTFELVAKFCYGVKLELTASNVVSLRCAAEHLEMTEEYGESNLISQAEGFFNQVVLRSWKDSMRALQTCSDVLSKAEELHIVKRCIESLAAKASTDPNLFGWPVLERGGPLQSPGGSVLWNGISTGARPKNTSLDWWYEDVANLSLPIYKRLIAVMESRGIRQEIIAGSHAFYAKTYLPGLNRRKVSGESTTRLTPATLGSPLSEEDQKILIEGIDQLLPMQKGLVQTKFLFGLLRTAMILRVSLSCISSLEKRIGMQLDQAALEDLLMPSFSYSMETLYNVDCVQRILDHFLAMDQATGGASPSCSVDDDGQLIGSPSLTPITMVAKLIDGYLAEVAPDVNVKLPKFQTLAAAVPEYARPLDDGLYRAIDIYLKSHPWLVESEREELCRLMDCQKLSLEACTHAAQNERLPIRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRNLRSGLVGSNDGWASAVKENQVLKVGMDNMRMRVSELEKECSNMRQEIEKLGGKTKGSTTSAWGAVSKKLGFKIKSQMCSAQEGSVSKQNNENNKVEKLKDRHVKHNRNSSISDKGSVSSNVPS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04228 647 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
Vifa1g04228 647 CDD BTB_POZ_NPY3-like 19 122 - -
Vifa1g04228 647 Coils Coil 543 577 - -
Vifa1g04228 647 Coils Coil 612 632 - -
Vifa1g04228 647 PANTHER OS12G0117600 PROTEIN 22 599 IPR043454 -
Vifa1g04228 647 Pfam BTB/POZ domain 27 113 IPR000210 GO:0005515
Vifa1g04228 647 Pfam NPH3 family 213 480 IPR027356 -
Vifa1g04228 647 SMART BTB_4 28 125 IPR000210 GO:0005515
Vifa1g04228 647 Gene3D Potassium Channel Kv1.1; Chain A 15 116 IPR011333 -
Vifa1g04228 647 MobiDBLite consensus disorder prediction 616 633 - -
Vifa1g04228 647 SUPERFAMILY POZ domain 16 114 IPR011333 -
Vifa1g04228 647 MobiDBLite consensus disorder prediction 604 647 - -
Vifa1g04228 647 ProSiteProfiles NPH3 domain profile. 213 504 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04228 Vifa-Chr1 653411853 653414695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04228 8 573 EF-hand Containing Proteins AT3G44820 48.459 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04228 - - psat:127075654 1242.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04228 1 653411853 653414695 Vifa1g04228 1 653411853 653414695 ECH