Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04216 ATGGATCAACATGAGGATGAGTGCCGTAACGGAGGTGAAAGTAACAGCAAACAAGATGATGAGGAAGCTGTTGCTCACCTTGAAGAAATCAAGAAATCAATTGAGGCAAAAATGGCTTTACGTCAAAGCAATTTGAATCCTGACAGGCCTGATTCAGGATTTTTTAGGACCTTGGATTCCAGCATTAAGCGCAACACTGCAGTTATTAAGAAACTGAAGCAGATTAATGAAGAGCAGCGTGAATCACTGATGGATGACTTGCGAAGTGTCAACTTAAGCAAATTTGTTAGTGAAGCAGTGGCAGCTATATGTGATGCAAGGCTTAGAAGTTCTGATATACAAGCAGCAGTTCAGATATGCTCTCTGCTTCATCAAAGATATAAGGATTTTGTGCCAACTCTGATTCAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAGTCCGGTGATGAATCAGATTCAGACAGAAACTTAAAGGCAATGAAGAAGCGGAGCTCTCTGAAACTTCTAATGGAGCTTTTTTTTGTTGGTGTTATTGAAGATGGTGGAATTTTTATCAATATCATAAAAGATCTTACCAGTGTGGAACAGCTGAAAGACCGGGAAGCTTTACAAACAAGTTTGACCCTTCTTTCCAGCTTTGCTCGGCAAGGAAGAATTTTCCTAGGACTTTCTCTGAGTGGGCCGGAAATTCAGGAAGAGTTTTTGAAAGGCCTTAACATCACGGTAGATCAAAAGAAAGTTATCCGGAAAGCATGTTTTTCATTTTATGATGCTGCAGCTGAACTACTTCAGTCTGAGCATTCCTCACTTCGATTAATGGAGCATGAAAATTCTAAGATTTTGAATGCAAAAGGAGAGCTAAGCGATGAAAATCTTTCTTCTTATGAAAAACTTCGTAAATCGTATGACCATTTGTACCGCAATGTCTCATCATTAGCTGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGCCACACAACACGGCTTACTAGTGGCGAAGAGGCGGTTTCTTCTGCTTCTGGGAAAGATTCTTCTGTTGAACCCGTATGGGATGATGAAGACACAAGGGCTTTTTATGAATGTTTTCCAGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCCAAAAGTCAATGAGCAATCTGTGAAGAGTCAAGACCAACCAACTGAAATATTACCTGAATCAGACAAAAGCCAACTGATCACCTTTGAAAGTGGAGAGGGCTCCACAGAGTCTAATGTTTTACCAGAGGGAGAAAGCACTGAGAGAGTGGATGATAAAGAAGAAAAAGAAAAGTCTAAAGATTTGGACATAGACAAGGAAAAAGAAAAAGAGAATGAGAAAAAAGGGGAGAATGACAAAGAGAAACTCAGAAGTGTTGAAGGAACAAATTTGGATGCTCTATTGCAGAGGCTTCCGGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACAGTAGAGTTCTGTTATCTAAATTCAAAATCAAATCGGAAAAAGCTTGTGAGGGCTTTGTTCAGTGTTCCAAGGACTTCTCTAGAGCTGCTAGCGTATTACTCACGCATGGTTGCTACACTCTCAACTTGTATGAAGGATGTCTCCTCTCTTCTATTGCAGATGTTGGAGGAGGAGTTCAACTTCTTAATAAATAAAAAGGACCAGATGAATATTGAGACAAAGATCAGGAATATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAGTTGCCCCTGCTGGCCTGGTCTTCAGTTGTTTGAAGGCCTGTTTAGATGATTTTAGTCATCACAACATTGATGTAGCTTGCAACCTTCTTGAAACATGTGGTCGTTTTCTGTATCGTTCTCCAGAAACTAGTATACGCATGGGTAACATGTTGGAGATACTAATGCGCTTGAAAAATGTTAAAAACTTGGATCCTAGACATAGCACTTTGGTGGAGAATGCATACTACCTTTGCAAGCCACCTGAAAGGTCTGCTCGAGTAGCTAAAGTCCGTCCTCCGTTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGACAAGTCTACCATTGAGCATGTGCTGAGGCAGCTTCGTAAATTACCATGGAGTGATTGTGAACCGTATCTTTTAAAATGCTTCATGAAGGTTCACAAAGGAAAATATGGTCAGATCCATCTGATTGCATCTCTTGCTGCTGGGTTAAGTCGCTATCATGATGAGTTTGCTGTGGCTATAGTTGATGAGGTTTTGGAGGAGATTAGAGTTGGGCTGGAACTAAATGACTATGGGATGCAACAAAGACGCGTTGCCAACATGCGATTTTTAGGGGAGCTTTACAACTACAAGCATGCTGACTCATCTGTTATTTTTGAGACACTATATCTCATTCTTATATATGGCCATGGAACAACAGAGCAAGATGTACTCGATCCACCTGAAGATTTTTTCCGTATAAGGTTGATCATTACTCTACTTGAAACTTGTGGCCATTACTTTGATCATGGCTCTTCTAAGAAGAAACTTGATCGGTTCCTAATACACTTCCAAAGGTATATCTTAAGCAAAGGTGCACTGCCTCTGGATGTCGAATTTGACTTGCAGGATCTGTTTGCGGACTTGCGTCCAAGTATGGTTCGTTACAATTCTGCTGATGAGGTGAATGCAGCTCTAGTGGAACTCGAGGAGCATGATCGAATAGTTTCTGCTGATAAGGCTAGTAGTGAAAAACATTCTGACACTGATAGGCCCTTAAGTAGGACCACTTCCACTGCTATGGTTCGCATTAAACAGAACAATGATAACGGCACTGAGGAAAATGGAGTGCAAGAAAATGTCAATGACGGTGAGCATGATTCAGGAAGTGACGTAAATGATGTGGAAGGACATGATGATGAAGAGTTGGATGAGGAGAATCATGATGATGGGTGTGAGACTGAGGATGACGATGAAGATGAGGACGGACCTGCTTCTGATGATGAAGATGAAGTCCATGTAAGACAGAAGGTAACAGAAGTCGACCCATTGGAAGAAGCCAATTTTGATCAGGAGCTCAAGGCTGTCTTACAGGAGAGTATGGAGCAGCGACGACTGGAGCTGCGGGGTCGTCCTACATTGAATATGATGATTCCAATGAATGTATTTGAAGGATCTGCCAAGGATCATCACGGGAGAGGAACTGGTGGGGAAAGTGGCGATGAAGCCTTAGATGATGATACTGGCATAAACAAAGAGGTTCAGGTGAAAGTTCTGGTGAAGCGTGGGAACAAACAACAAACAAAGCAGATGTACATCCCCAGTGATTCCTCACTGGTGCAGAGTACGAAACAAAAAGAAGCAGCTGAGCTTCAGGAGAAAGAAGACATTAAGAGGCTTATCTTGGAGTATAATGATAGAGAGGAGGAAGAGTTTAATGGATTAGGGGCCCAACCTACAAACTGGATGCAAAGTGGAAGTAACAAAGCTGGTGGTCGTGGAAACTCTTTTGAAGGAACCAGTGGCAGGGGTGGTGGATCAAGGCATCGTCATCATAACTACTATTCTGGTGGTGGGATCTACTATGGCAGAAGAAGGTGA 3576 0.4195 MDQHEDECRNGGESNSKQDDEEAVAHLEEIKKSIEAKMALRQSNLNPDRPDSGFFRTLDSSIKRNTAVIKKLKQINEEQRESLMDDLRSVNLSKFVSEAVAAICDARLRSSDIQAAVQICSLLHQRYKDFVPTLIQGLLKVFSPGKSGDESDSDRNLKAMKKRSSLKLLMELFFVGVIEDGGIFINIIKDLTSVEQLKDREALQTSLTLLSSFARQGRIFLGLSLSGPEIQEEFLKGLNITVDQKKVIRKACFSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENLSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRLTSGEEAVSSASGKDSSVEPVWDDEDTRAFYECFPDLRAFVPAVLLGETEPKVNEQSVKSQDQPTEILPESDKSQLITFESGEGSTESNVLPEGESTERVDDKEEKEKSKDLDIDKEKEKENEKKGENDKEKLRSVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELLAYYSRMVATLSTCMKDVSSLLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKVAPAGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETSIRMGNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSDCEPYLLKCFMKVHKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRVANMRFLGELYNYKHADSSVIFETLYLILIYGHGTTEQDVLDPPEDFFRIRLIITLLETCGHYFDHGSSKKKLDRFLIHFQRYILSKGALPLDVEFDLQDLFADLRPSMVRYNSADEVNAALVELEEHDRIVSADKASSEKHSDTDRPLSRTTSTAMVRIKQNNDNGTEENGVQENVNDGEHDSGSDVNDVEGHDDEELDEENHDDGCETEDDDEDEDGPASDDEDEVHVRQKVTEVDPLEEANFDQELKAVLQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGGESGDEALDDDTGINKEVQVKVLVKRGNKQQTKQMYIPSDSSLVQSTKQKEAAELQEKEDIKRLILEYNDREEEEFNGLGAQPTNWMQSGSNKAGGRGNSFEGTSGRGGGSRHRHHNYYSGGGIYYGRRR 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04216 1191 Pfam Up-frameshift suppressor 2 993 1128 IPR007193 -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 1052 1071 - -
Vifa1g04216 1191 SUPERFAMILY ARM repeat 671 896 IPR016024 -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 1 24 - -
Vifa1g04216 1191 FunFam Regulator of nonsense transcripts UPF2 672 902 - -
Vifa1g04216 1191 SUPERFAMILY ARM repeat 470 664 IPR016024 -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 918 943 - -
Vifa1g04216 1191 Gene3D - 1082 1106 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 384 424 - -
Vifa1g04216 1191 FunFam Regulator of nonsense transcripts UPF2 14 324 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 902 917 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 959 992 - -
Vifa1g04216 1191 SUPERFAMILY ARM repeat 78 198 IPR016024 -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 383 464 - -
Vifa1g04216 1191 Pfam MIF4G domain 476 660 IPR003890 GO:0003723|GO:0005515
Vifa1g04216 1191 Pfam MIF4G domain 678 872 IPR003890 GO:0003723|GO:0005515
Vifa1g04216 1191 SMART if4_15 62 284 IPR003890 GO:0003723|GO:0005515
Vifa1g04216 1191 SMART if4_15 473 661 IPR003890 GO:0003723|GO:0005515
Vifa1g04216 1191 SMART if4_15 676 877 IPR003890 GO:0003723|GO:0005515
Vifa1g04216 1191 Gene3D - 434 674 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 1142 1160 - -
Vifa1g04216 1191 Coils Coil 544 564 - -
Vifa1g04216 1191 Coils Coil 17 37 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 425 464 - -
Vifa1g04216 1191 Gene3D - 14 324 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 333 347 - -
Vifa1g04216 1191 FunFam Regulator of nonsense transcripts UPF2 431 669 - -
Vifa1g04216 1191 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 19 1138 IPR039762 GO:0000184
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 944 958 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 316 351 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 902 999 - -
Vifa1g04216 1191 MobiDBLite consensus disorder prediction 1141 1191 - -
Vifa1g04216 1191 Gene3D - 675 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04216 Vifa-Chr1 651603965 651620008 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04216 K14327 - gmx:100786092 1956.03