Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04080 ATGGATGATGATGAACCGCTTACTCCAGCCGGGAGGCTGTTCCTTCAACCACAGATGAACCAAGTAATCCACTGCGTAGTAGGGCTAAAGAACAGCGTGGATGTTGATGCAATCATGACGGAAATTGACAACTCTCTTATACTACAACATCCAAGATTCACTAGCCTCATGATTCGTGACCATCGAGGCGTTGAGCACTGGCGTCCAACCAAAATTGACCTCAGCCGCCATGTACTCATCATCGACCATCCAGTCTCCGACGCCGTCAACGATCAATCGGCAATCAACGACTATGTCGCCGATTTATGCACAACACCCAAACTCAGCATGGATAAGCCACTCTGGGAGATCCATATCCTGAAAGCACACAAGTGTCTCATATTTCGAATTCATCATTCACTTGGAGACGGAATTTCACTCATGTCACTGCTTCTCGCAAGCTGTAGGAAGCTCCACGATCCCCACGCGCTTCCAACCATATCTACTCCCACCATTAAATCTCGCCGCACTTTGTGGAATCTTCTCACTGCCTTATTCTTTTCTTTTATATATCTGTTCCAATTTATGCTCAGGTGTCTGTGGATTCGTGACCACAAAACTGCCATATCGGGTGGCGACGGTGTTGAACTCTGGCCAAGGAAGATCGCCACGGCTAGTTTTTCATTGGAAGACATCAAGACTGTGAAAACTGCCGTTCCTAACGCGACCATAAATGACGTTCTATTTGCAGTTATATCATCTGGGATATCAAGATACCTGGACTTCAGAGAACCTAATGGGCTGCGAGACGGTGTTCAGCTAACAGGGTTGGCTATGGTTAACTTGAGAAAGCAGCCAGGATTGCAGGAACTGTCCAATTTGATGAAAAGCAATTCAGGGGCAAAGTGGGGCAACAAATTTGGTATGATCCTACTGCCTATATATTATCACGGAAGCAAGAATTCAAATCCTGTAGAATATTTGAAGAGGGCTAAAGTAATGATTGACAGAAAGAAAAAATCTTTGGAGGCCCATTTGTCATACAAAATTGGAGATTTAGTAATGTCCACTCTTGGTCCAAAGCTTGCTAGTTTGCTAAATTATAGGATACTCTGCAACACTACCTTTGCATTCTCAAATGTTGTTGGCCCACAAGAGGAGATTATGATTGCAGGCAATCCTGTAACGTTCTTAAGGGCAAATAACTCTGCCTTGCCTCATGCACTTGTTTTGCTTATGGTGAGTTATGCTGGAAAGGCAGACATGCAAGTGCAGGTGGCCAAAGACATCATTCCGGATCCTGAGTTTCTTGCCAAGTGCTTTGAAGATGCATTACTTGAATTGAAGGAGCACGTTACAGCCAAAATTTGA 1350 0.4452 MDDDEPLTPAGRLFLQPQMNQVIHCVVGLKNSVDVDAIMTEIDNSLILQHPRFTSLMIRDHRGVEHWRPTKIDLSRHVLIIDHPVSDAVNDQSAINDYVADLCTTPKLSMDKPLWEIHILKAHKCLIFRIHHSLGDGISLMSLLLASCRKLHDPHALPTISTPTIKSRRTLWNLLTALFFSFIYLFQFMLRCLWIRDHKTAISGGDGVELWPRKIATASFSLEDIKTVKTAVPNATINDVLFAVISSGISRYLDFREPNGLRDGVQLTGLAMVNLRKQPGLQELSNLMKSNSGAKWGNKFGMILLPIYYHGSKNSNPVEYLKRAKVMIDRKKKSLEAHLSYKIGDLVMSTLGPKLASLLNYRILCNTTFAFSNVVGPQEEIMIAGNPVTFLRANNSALPHALVLLMVSYAGKADMQVQVAKDIIPDPEFLAKCFEDALLELKEHVTAKI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04080 449 SUPERFAMILY CoA-dependent acyltransferases 3 151 - -
Vifa1g04080 449 PANTHER O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN 4 446 IPR045034 GO:0008374|GO:0045017
Vifa1g04080 449 Pfam WS/DGAT C-terminal domain 296 442 IPR009721 -
Vifa1g04080 449 Pfam Wax ester synthase-like Acyl-CoA acyltransferase domain 66 166 IPR004255 GO:0004144|GO:0045017
Vifa1g04080 449 Gene3D - 3 164 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04080 Vifa-Chr1 628108436 628112666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04080 3 448 Acyl Lipid Metabolism Gene Families AT5G53390 35.865 5.35e-89 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04080 - - aprc:113868708 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04080 1 628108436 628112666 Vifa1g04080 1 628108436 628112666 ECH