Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04078 ATGTCTTCTGGAACGGTAGCGGGGATTCAGGGGCAACCTTTGGAGGTGACGGTTGTTTCTTGCGCGAAATTGAAGGACACTGAATGGATTTCAAGACAAGATCCCTACGTTTGTCTTGAATACGCTTCCACCAAGTTCCGGACAAGAACCTGCACAGACGGTGGAAAACATCCGGTTTTTCAAGAGAAGTTCGTTGTGCCGCTGATCGAAGGTCTTCGCGAGCTCACTGTTGTCGTTTGGAACAGCAATACCCTCACATTCGATGGTTTTATAGGCACGGGAAAGGTTCAATTGAACAAGGTTTTGTCTCAAGGTTTTGATGATTCTTCTTGGCCGCTTCAAACCAAATCTGGCAGGCACGCAGGTGAAATCAAACTTATATTGCATTATGCTAATGCCAAACTAAATCAACAGAAACTAGATTCTTCCTCAACCCATGTGGCAACAACACCCACAGCTCCTTCCTACTACCCACAACAACCATCATACTCTAATTATCACCATCCAACACCTGCTTTTGCTTATCCTACTCCTCCTCCTCCTGCTTCACATCATTCATCTCCCTATCCACCACCCTCATCATCACCATACCCCCCTCCTCCACACTCTGCCTATCCACCACCCTCATCATCACCATACCCCCCTCCTTCACACTCTGCTTATCCACCACCCTCATCATCACCATACCCCCCTCCACACTCAGCTTATCCACCACCCTCATCATCATCACCATACCCTCCTCCACGCTCTTATCCACCACCTTCATACCCTCCACCTGCGGCTTATCCTCCAAACGCTGGAATGTACCCTCCACCTCCATACTGA 825 0.4861 MSSGTVAGIQGQPLEVTVVSCAKLKDTEWISRQDPYVCLEYASTKFRTRTCTDGGKHPVFQEKFVVPLIEGLRELTVVVWNSNTLTFDGFIGTGKVQLNKVLSQGFDDSSWPLQTKSGRHAGEIKLILHYANAKLNQQKLDSSSTHVATTPTAPSYYPQQPSYSNYHHPTPAFAYPTPPPPASHHSSPYPPPSSSPYPPPPHSAYPPPSSSPYPPPSHSAYPPPSSSPYPPPHSAYPPPSSSSPYPPPRSYPPPSYPPPAAYPPNAGMYPPPPY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04078 274 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Vifa1g04078 274 SMART C2_3c 13 110 IPR000008 -
Vifa1g04078 274 Gene3D C2 domain 12 132 IPR035892 -
Vifa1g04078 274 MobiDBLite consensus disorder prediction 172 274 - -
Vifa1g04078 274 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 7 240 - -
Vifa1g04078 274 MobiDBLite consensus disorder prediction 141 167 - -
Vifa1g04078 274 CDD C2 14 111 - -
Vifa1g04078 274 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 131 IPR035892 -
Vifa1g04078 274 MobiDBLite consensus disorder prediction 141 274 - -
Vifa1g04078 274 Pfam C2 domain 14 104 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04078 Vifa-Chr1 627510066 627511280 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04078 - - vra:106777522 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04078 1 627510066 627511280 Vifa1g04078 1 627510066 627511280 ECH