Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04076 ATGTCTGTCCGACTCGCCTTGAGGTCATTTACTCGTTACTGCCATTTCTCCGCAGAAGATTCCAAATGGCTTACACTTCCACCTGTGAATATCACCAGCGTGAACACTTCCTCCAACCAACTCTCTTCCTCCACTTCCACCACTGCCCTCAAATGGGTCATCCGTTGCTGCCCCGAACTACCCAAAACCCTCGTCCACAAACTCTTTCGTCTTAAACAAGTTCGAATGCTTCCACCACTACAAGAACAAGAACAAGATGGTAAATTCATAAAGGTGACTCCTAAGGATACCTTGAACGCCGGAGATCGTATATTTCTTCCACATTCTGTGAAACAACAAACGCCCAAACGTCTCGACTCTCCACTCACTCCAACTCTCACCGCCAAACAAATCCATTTTATCCGTGCTCTTGTTATCTATAAGGATCCTCAGATTCTTGTCCTCAACAAACCTCCCGGAATGCCAGTACAGGGTGGCATTAATATCAAATGGAGTTTAGATGCTGTGGCTGCTGAATGTTTAAATTATGAATGCCCTGAATCCCCTCGTCTGGTGCATAGACTAGACAGAGACTCTTCTGGGATTCTCGTCATGGGAAGAACAAAGACAAGTACTACGCTTCTGCATTCCATCTTCCGCGACAAAACTTCCAGGGCTTCAGATGATAATGGCACGGAAAAGAGAATCCTACAAAGAAAGTATTTGGCACTGGTGCTCGGATGTCCCAGACGTTCACGGGGGTTGGTTGCTGCTCCACTGGGTAAGGTGGTGGTTGACAACGGAAAATCAGATCGAATAACAATCGTTGACAATTCTACATCACTGTCACCCCAACATGCAATTACAGAGTACCGAGTGATTGCATCATCATCTCATGGCTATACATGGTTGGAGCTTTCCCCCTTAACTGGTAGAAAACACCAGCTCCGAGTCCATTGTGCCGAGGTGTTAGGTACACCAATAGTTGGGGACTACAAGTATGGATGGCAAGCTCATAAGAAGTGGGGACATTTTGATTTGTCTAATTTGGAGGACTCAACTGAAGAGCTTCTGAAGGAAGAGGCACTACCTTTTGGCCTTAACTTGAACAAGGGTAGCATCTCTGACAAGCGTCCTCATTTACATCTTCATTGCAAGCAAATAGTCTTGCCTGATATATCTCAAGCACTGCAAAATGTGCAATCACTGTCAACTTTAAGTTATGACCTTTCAGCAGTTAAAGCACTTGAGTTGGAAGCGGATTTGCCTCCATTCATGAAAAAGAGTTGGGATGTGACAAATTCGTGA 1287 0.4514 MSVRLALRSFTRYCHFSAEDSKWLTLPPVNITSVNTSSNQLSSSTSTTALKWVIRCCPELPKTLVHKLFRLKQVRMLPPLQEQEQDGKFIKVTPKDTLNAGDRIFLPHSVKQQTPKRLDSPLTPTLTAKQIHFIRALVIYKDPQILVLNKPPGMPVQGGINIKWSLDAVAAECLNYECPESPRLVHRLDRDSSGILVMGRTKTSTTLLHSIFRDKTSRASDDNGTEKRILQRKYLALVLGCPRRSRGLVAAPLGKVVVDNGKSDRITIVDNSTSLSPQHAITEYRVIASSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGHFDLSNLEDSTEELLKEEALPFGLNLNKGSISDKRPHLHLHCKQIVLPDISQALQNVQSLSTLSYDLSAVKALELEADLPPFMKKSWDVTNS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04076 428 Gene3D Pseudouridine synthase 129 395 - -
Vifa1g04076 428 CDD PseudoU_synth_RluA_like 145 336 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa1g04076 428 SUPERFAMILY Pseudouridine synthase 132 385 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa1g04076 428 Pfam RNA pseudouridylate synthase 145 314 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa1g04076 428 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 34 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04076 Vifa-Chr1 627230006 627233574 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04076 - - gmx:100779473 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04076 1 627230006 627233574 Vifa1g04076 1 627230006 627233574 ECH