Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04062 ATGGCAGTTTCAATGGCGGCTGGACTATTCTCTGCTTCCACTCTAACTCTCCGCCCACAACTCCAACACAAGTTTCCGTTTTCCGCACCTCCTCCTTCTGTACGGATGGTTCCGCTCCGAACAGTCACTTATGCCACCGTCTCTCAACCACCTGCCGACGGAAAAATTCCTGGTTTAATGAAACCCAAAAAAATCTCCCCCGAGATGCAAGACCTCATCGGACTTCCGGAGGTTTCTCGAACCCAAGCACTCAAACATATTTGGGCCTACATCAAGGAAAACAATCTTCAGAACCCTGGAAACAAGAGGCTTATTCGGTGTGATGAGAAGCTGAAGAAGATATTTGCAGGGCGTGATGAAGTTGGTATGCTTGAGATTGCTGGTTTGATTAGTCCTCACTTCCTTAAATGA 411 0.4745 MAVSMAAGLFSASTLTLRPQLQHKFPFSAPPPSVRMVPLRTVTYATVSQPPADGKIPGLMKPKKISPEMQDLIGLPEVSRTQALKHIWAYIKENNLQNPGNKRLIRCDEKLKKIFAGRDEVGMLEIAGLISPHFLK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04062 136 SUPERFAMILY SWIB/MDM2 domain 55 136 IPR036885 -
Vifa1g04062 136 ProSiteProfiles SWIB/MDM2 domain profile. 58 136 IPR003121 -
Vifa1g04062 136 Pfam SWIB/MDM2 domain 61 134 IPR003121 -
Vifa1g04062 136 Gene3D SWIB/MDM2 domain 55 136 IPR036885 -
Vifa1g04062 136 SMART swib_2 59 136 IPR019835 -
Vifa1g04062 136 CDD SWIB-MDM2_like 64 134 - -
Vifa1g04062 136 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 54 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04062 Vifa-Chr1 624062152 624062775 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vifa1g04062 SWIB 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04062 - - lja:Lj1g3v0050930.1 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04062 1 624062152 624062775 Vifa1g04062 1 624062152 624062775 ECH