Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04057 ATGGGTGAAGCAAGTAATCCAAAACTAACTTTACTGCCTCTGATAGCTCTCATCTTCTACGAAGTCTCCGGCGGTCCTTTCGGAATCGAGGATTCTATCAGAGCCGGCGCCGGTCCTCTTCTCTCCCTCCTCGGTTTCTTATTCTTCCCTCTCATTTGGAGCGTTCCTGAAGCTCTCGTCACCGCCGAACTCGCCACCACTTTCCCTCACAACGGCGGTTATGTCCTTTGGATTTCATCCGCTTTTGGTCCCTTTTGGGGATTCCAAGAAGGCTTTTGGAAATGGTTCAGTGGCGTCATGGATAATGCTCTTTACCCTGTTTTGTTCCTCGATTACTTGAAGCATTCTTTTCCGATTTTTAACTTAATGATGGCCAGAATACCTGCTCTTTTAGGAATCACTCTTTCACTTACTTATTTGAATTATAGAGGCCTTCACATTGTTGGTTTCACTGCTGTTTTCTTAGCTGTTTTTTCACTTTCTCCGTTTCTTGTTATGGCGATTCTTTCTGTTCCAAAGGTTAGGCCAAGGAGATGGTTTGTTGTTGATTTTAACAAAGTGAATTGGCGTGGTTACTTCAATAACATGTTCTGGAATTTGAATTATTGGGATAAAGCTAGTACTCTTGCAGGGGAGGTTGAAAATCCGGGGACTGGTGCTTTGAGTTCATCACCAACTGAATGGGCGGATGGTTATTTTGCTCAAGTGGGGATGTTGATTGGTGGATTTTGGCTTAGACTGTGGATTCAAGCCGCAGCTGCCATGTCTAATCTTGGTTTGTTTGAAGCAGAAATGAGTAGTGATGCTTTTCAGCTTCTAGGGATGAGCAAAATGGGATTGCTTCCAGCTTTTTTTGCATCAAGGTCTAAGTATGGAACACCAACTGTTAGCATTTTGTTCTCTGCTACTGGAGTTATCTTCTTGTCATGGATGAGCTTTCAGCAAATAGTGGAATTTCTCAATTTCTTATATGCTATAGGAATGCTTCTCGAGTTTGCAGCTTTTATAACATTGAGATTGAAGAAGCCAGATCTTTGCAGACCGTACAGAGTTCCGTTGCAAACATTTTGGGCGGCCATGCTTTGTTTGCCTCCTGCTTCGTTGCTTATACTTGTAATGTGTTTGGCGTCTTTGAGAACGATCTTTGAATGTATTCCAATTGTTTCAGAATTGGTTGATCATGAAAACAAGGATGCTGAGCTTCTTGTGAGTTTTTCACCATTGCCTATTGTGGAAGAAGAATTGTCGTTAATACAAACTGATTCTAGCCCAAGCTAG 1278 0.4233 MGEASNPKLTLLPLIALIFYEVSGGPFGIEDSIRAGAGPLLSLLGFLFFPLIWSVPEALVTAELATTFPHNGGYVLWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFLDYLKHSFPIFNLMMARIPALLGITLSLTYLNYRGLHIVGFTAVFLAVFSLSPFLVMAILSVPKVRPRRWFVVDFNKVNWRGYFNNMFWNLNYWDKASTLAGEVENPGTGALSSSPTEWADGYFAQVGMLIGGFWLRLWIQAAAAMSNLGLFEAEMSSDAFQLLGMSKMGLLPAFFASRSKYGTPTVSILFSATGVIFLSWMSFQQIVEFLNFLYAIGMLLEFAAFITLRLKKPDLCRPYRVPLQTFWAAMLCLPPASLLILVMCLASLRTIFECIPIVSELVDHENKDAELLVSFSPLPIVEEELSLIQTDSSPS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04057 425 Pfam Amino acid permease 234 363 IPR002293 GO:0016020|GO:0022857|GO:0055085
Vifa1g04057 425 Pfam Amino acid permease 13 200 IPR002293 GO:0016020|GO:0022857|GO:0055085
Vifa1g04057 425 Gene3D Amino acid/polyamine transporter I 6 392 - -
Vifa1g04057 425 PANTHER POLYAMINE TRANSPORTER PUT1 6 217 IPR044566 GO:0022857
Vifa1g04057 425 PIRSF AA_transporter 217 389 - -
Vifa1g04057 425 PIRSF AA_transporter 2 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04057 Vifa-Chr1 623416165 623417812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04057 6 380 Organic Solute Cotransporters AT3G19553 75.810 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04057 - - gmx:100776817 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04057 1 623416165 623417812 Vifa1g04057 1 623416165 623417812 ECH