Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04054 ATGGCTTCATCTTCTTCTCAACCGGAAGGTTTATCGGAAGAGGATCACGACTTGATCCATGGCTCTGAATCTGGTTGGGTCGATGCTCGAACCTCATGCCCCCATCTCGATTCCCTATCCACTGATCTCACCCACATTCCAACCCCTAATACTCCCTGCAACAGGTGCCAACATCCGAATGAAAACTGGTTGTGTTTGTCGTGTAAAGACGTGCTCTGTGGCCGTTTTGTGAACAGGCATATGCTCCACCATTTTCGGGAAACTAATCATAGCGTGGCTCTCAGTTTCAGTGATCTGTCGGTATGGTGCTTCTCGTGCGATGCGTATTTGGATGCTCATGTTATTCCGCAATTGCACCCTGTTCATGAAGTGGCCTATGTTTTGAAATTCGGCGAGCTTCCACCAGTTGGAGCTAGCTGA 420 0.4881 MASSSSQPEGLSEEDHDLIHGSESGWVDARTSCPHLDSLSTDLTHIPTPNTPCNRCQHPNENWLCLSCKDVLCGRFVNRHMLHHFRETNHSVALSFSDLSVWCFSCDAYLDAHVIPQLHPVHEVAYVLKFGELPPVGAS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04054 139 SMART Zf_UBP_1 52 101 IPR001607 GO:0008270
Vifa1g04054 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 134 IPR013083 -
Vifa1g04054 139 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 3 137 - -
Vifa1g04054 139 SUPERFAMILY RING/U-box 30 122 - -
Vifa1g04054 139 Pfam Zn-finger in ubiquitin-hydrolases and other protein 53 111 IPR001607 GO:0008270
Vifa1g04054 139 ProSiteProfiles Zinc finger UBP-type profile. 31 131 IPR001607 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04054 - - pcin:129286846 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04054 1 622972797 622973551 Vifa1g04054 1 622972797 622973551 ECH