Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04046 ATGAAAATCCGATCAGTATTCGACGGCGGAGCATTGAAAACCGAATTCGAGAAAATAGGAATCGACCCAAAGTTCGTTCCAATCATATGGAAGCATCTCTTTCTCACTCTCAGAAACACTAACACTGAAATCAATTCCGATTGTAATTGGGAATGGGAAAAACACGTTCCTTCTTTACCTTCTTCAGCATATCCACTCCTCCGTTCCAATTTCAAAACCCCTCTCTCTTCTACTCTCCACTCCGTTTTCCACTCTTCTGATAACCTCACTTCAAAGCTCCTCATCAAGCTGAATAATGGAGAATTTGTGGAGGCTGTGATAATGAGATATGATACTCGTTTGGGGAAATATGGTGGGAAACCACGTCTTGGTGGTCCCAGAGCTACTCTCTGTATTTCTTCTCAGGTAGGTTGCAAAATGGGTTGTAGATTCTGTGCAACTGGAAGTATGGGATTCAAAAGTAATTTATCTTCTGGAGAAATCGTGGAGCAATTGGTTCATGCCTCTAGTTTCGCACAAATCCGTAACGTTGTCTTTATGGGAATGGGAGAGCCTCTGAACAACTATTCTGCTGTGGTAGAATCTGTTCGTATCATGACTGGGTCACCATTTCAATTGTCATTCAAAAGGATTACCATCTCAACGGTTGGCATCATTCATGCTATCAACAAGCTTCATAATGATTTGCCTGGTTTGAACTTGGCAGTCTCACTACACGCACCAGCCCAAGACATCCGTTGTCAGATAATGCCCGCTGCCCGTGCTTTCTCTTTGGAAAAACTTATGAATTCACTACAAGAATATCAAAGGAAAAGTCTGCAGAAAATATTAATTGAATACATTATGCTTGATGGTGTGAATGATGAAGAGCACCATGCCCACCTATTAGGAAAACTGTTGGAGACATTTGAAGTGGTAGTGAACTTAATACCTTTCAACTCCATTGGTACATTGAGTCAATTCAAACCTACTAGTGAGCAGAAAGTGTTCAACTTTCAGAAAATTTTAAGGGGTACCTATGATATTCGAACAACAGTTCGGAAGCAGATGGGTGAGGACATAAGTGGTGCCTGTGGGCAGTTGGTGATTAAAGCACCTGATATGTCTCTTGGAAATGCGGATCCCCTAACGGATATAGAAGATCTTGTAATTTGA 1155 0.4139 MKIRSVFDGGALKTEFEKIGIDPKFVPIIWKHLFLTLRNTNTEINSDCNWEWEKHVPSLPSSAYPLLRSNFKTPLSSTLHSVFHSSDNLTSKLLIKLNNGEFVEAVIMRYDTRLGKYGGKPRLGGPRATLCISSQVGCKMGCRFCATGSMGFKSNLSSGEIVEQLVHASSFAQIRNVVFMGMGEPLNNYSAVVESVRIMTGSPFQLSFKRITISTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFSLEKLMNSLQEYQRKSLQKILIEYIMLDGVNDEEHHAHLLGKLLETFEVVVNLIPFNSIGTLSQFKPTSEQKVFNFQKILRGTYDIRTTVRKQMGEDISGACGQLVIKAPDMSLGNADPLTDIEDLVI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04046 384 Pfam Radical SAM superfamily 133 294 IPR007197 GO:0003824|GO:0051536
Vifa1g04046 384 PIRSF Cfr 46 374 IPR004383 GO:0006364|GO:0008173
Vifa1g04046 384 PANTHER 23S RRNA METHYLTRANSFERASE 7 365 IPR040072 -
Vifa1g04046 384 CDD Radical_SAM 137 338 - -
Vifa1g04046 384 SUPERFAMILY Radical SAM enzymes 126 296 - -
Vifa1g04046 384 Pfam 4Fe-4S single cluster domain 137 223 - -
Vifa1g04046 384 SFLD adenosine C2 methyltransferase (RlmN-like) 81 365 IPR004383 GO:0006364|GO:0008173
Vifa1g04046 384 Gene3D Aldolase class I 78 368 IPR013785 -
Vifa1g04046 384 FunFam 23S rRNA methyltransferase 77 368 - -
Vifa1g04046 384 ProSiteProfiles Radical SAM core domain profile. 124 353 IPR007197 GO:0003824|GO:0051536
Vifa1g04046 384 SFLD methyltransferase (Class A) 81 365 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04046 - - tpra:123909522 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04046 1 620990341 620993363 Vifa1g04046 1 620990341 620993363 ECH