Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04045 ATGGCGATGGAGGGAAGCGAAGGCAATAGCGATGCTGTATCTCCTCATCCATGGCAGTCTTACAACACTGTATACACAACCGCCAAAGCAGGAATGGAGGGGGTTGACAAGGAGAAAGTACAAAAGATAGTGTATGAAATGAGCAAAGGATCCAAATATTTTCAGAATGAGGAACGGAAGGAAGCTTTTATCAAACAGAAAATTGAAAACATGCGACTTCAATTCGCAAAGCTTTCACCGTCTGATTTATCCCATTACCAGAAGGTTGCTGAAAGAAGGATTCTTGAGCTGGAAGCTTCACGTGACCTTTCAAGGATCTGGTTACATGTAGATATGGATGCTTTCTATGCAGCAGTTGAGACTTTAAGTAACCCTACGTTGAAGGGCAAACCAATGGCTGTGGGTAGCATGTCTATGTTATCGACTGCCAATTATGAGGCCAGGAAATTTGGGGTTCGTTCTGCCATGCCTGGGTTCATTGCACGGAAGCTATGTCCAGAGTTAATCCTCGTCCCAACAGATTTCAAAAAGTATACACATTACAGTGATTTGACGAGAAAAGTTTTTCAGAGGTACGATCCCAATTTCATTGCTGGTAGTCTGGATGAAGCATACCTTGATATAACTGAAGTTTGCAGAGAAAGGAATGTCAAATGTGAAGAAATTGCTCAAGAACTCAGGGACGGTGTTTATGAAGAGACTGGGCTCACATGTAGTGCTGGAGTGGCACCGAATCGTTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCATGGCCATTATGACTTTCATATCCTCTCTTCCTATCAGAAAGATTGGAGGCATTGGTAAGGTCACTGAACATATTTTGAAAGATGTTTTTGGAATAAACACATGTGAGCAGATGCTGGATAAGGGTAGCTACCTGTGTGCCCTTTTTTCTCAGTCAACTGCAGGTCTTGGAAAGACTGATTCTCCCCAAGTAAGTTTTCGGAAAAGTATCAGCAATGAGAGGACATTTTCTGCCACTGAGGACGAAGTGTTGTTGCAGAAAAAATTGGCGGAGCTTGCTGAAATGCTGTCCACAGACATGCAAAAAGAGGGTCTGCATGGGCGAACGTTGACTCTTAAGCTGAAAACTGCTTCTTTTGAGGTTCGGAATAGAGCTGTGACTTTACAAAACTACATCAACTCAAGCGAGGATATTCTGAAGCATGCATCAAAATTGCTGAAAGCTGAACTTCCTGTTTCAGTAAGATTAATAGGTCTTAGAGTATCACAGTTTAATGGAGATAAATGTGGTGCTACCCCTGATCCTACACAGAAGACTATTACCAATTTCATTACTTCAGGAGAAGCCAATAGGAAAAATAATTCTTTTTCAGATGTTACAGATCATGACTTTGTCAGCGATACAGAAACTGACCCTTCCATTGATGTTCGGCACACAGGCCAGCTTCATAGCCGAGATTCTTTTGATGGTAATCATTCATTAGATGTAAATCACCAAAGCTGCACTCTCTGGAAAAATGATGGTGCAGAGAAGGTACAAACTTCTGGTAATGATGCTGCAAGTTCTCACCACAGTGGACTTACAGAGCTGCTTGGATCAACTTCATCCCAGGGGCAGTTTGAGGGCAAAAATGTGAATGATGGGTCTAATCTTATCGAGGAAGATAGACTTAATTCTTGTCAGGAAACCATAATGTCGTGGTTGAATGACTATAAATGTTCACTCTGTGGAATAGAACTTCCTCCAAGTTTTGTTGAGGAAAGATTAGAGCATTCTGATTTCCATTTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGTATTCGCCAAACATCTATTCCGATTCATAGTCAGGATCAAAGGCACCGAATCAATAGACAAAGCAAATCCAAGAAGCAAAAGTTTTCGCAGAAAGAGGGCCGAAATACTCCCATTGATTATTTTTTTGTTAAGAAATAA 1980 0.4121 MAMEGSEGNSDAVSPHPWQSYNTVYTTAKAGMEGVDKEKVQKIVYEMSKGSKYFQNEERKEAFIKQKIENMRLQFAKLSPSDLSHYQKVAERRILELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGKPMAVGSMSMLSTANYEARKFGVRSAMPGFIARKLCPELILVPTDFKKYTHYSDLTRKVFQRYDPNFIAGSLDEAYLDITEVCRERNVKCEEIAQELRDGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAIMTFISSLPIRKIGGIGKVTEHILKDVFGINTCEQMLDKGSYLCALFSQSTAGLGKTDSPQVSFRKSISNERTFSATEDEVLLQKKLAELAEMLSTDMQKEGLHGRTLTLKLKTASFEVRNRAVTLQNYINSSEDILKHASKLLKAELPVSVRLIGLRVSQFNGDKCGATPDPTQKTITNFITSGEANRKNNSFSDVTDHDFVSDTETDPSIDVRHTGQLHSRDSFDGNHSLDVNHQSCTLWKNDGAEKVQTSGNDAASSHHSGLTELLGSTSSQGQFEGKNVNDGSNLIEEDRLNSCQETIMSWLNDYKCSLCGIELPPSFVEERLEHSDFHFAEKLQKEESSIRQTSIPIHSQDQRHRINRQSKSKKQKFSQKEGRNTPIDYFFVKK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04045 659 CDD PolY_Pol_IV_kappa 108 432 IPR022880 GO:0003887
Vifa1g04045 659 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 335 430 IPR036775 GO:0003684|GO:0006281
Vifa1g04045 659 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 14 657 - -
Vifa1g04045 659 MobiDBLite consensus disorder prediction 613 652 - -
Vifa1g04045 659 Gene3D - 263 325 - -
Vifa1g04045 659 Gene3D - 333 437 IPR036775 GO:0003684|GO:0006281
Vifa1g04045 659 ProSiteProfiles UmuC domain profile. 107 287 IPR001126 GO:0006281
Vifa1g04045 659 Pfam impB/mucB/samB family C-terminal domain 335 435 IPR017961 GO:0003684|GO:0006281
Vifa1g04045 659 PIRSF DNA_pol_eta 99 221 - -
Vifa1g04045 659 PIRSF DNA_pol_eta 217 311 - -
Vifa1g04045 659 PIRSF DNA_pol_eta 317 659 - -
Vifa1g04045 659 MobiDBLite consensus disorder prediction 476 497 - -
Vifa1g04045 659 Pfam IMS family HHH motif 270 300 IPR024728 -
Vifa1g04045 659 FunFam DNA polymerase IV 332 438 - -
Vifa1g04045 659 Gene3D - 112 262 IPR043128 -
Vifa1g04045 659 FunFam DNA polymerase kappa subunit 24 114 - -
Vifa1g04045 659 Gene3D - 124 172 - -
Vifa1g04045 659 Gene3D - 25 111 - -
Vifa1g04045 659 MobiDBLite consensus disorder prediction 520 557 - -
Vifa1g04045 659 FunFam DNA polymerase kappa subunit 167 262 - -
Vifa1g04045 659 FunFam Polymerase (DNA directed) kappa 117 169 - -
Vifa1g04045 659 Pfam impB/mucB/samB family 110 254 IPR001126 GO:0006281
Vifa1g04045 659 SUPERFAMILY DNA/RNA polymerases 82 321 IPR043502 -
Vifa1g04045 659 Pfam Ubiquitin-Binding Zinc Finger 578 611 IPR041298 -
Vifa1g04045 659 ProSiteProfiles Zinc finger UBZ3-type profile. 574 611 IPR041298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04045 Vifa-Chr1 620861552 620866339 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04045 K03511 - gmx:100816973 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04045 1 620861552 620866339 Vifa1g04045 1 620861552 620866339 ECH