Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04002 ATGACCCTAACCCGAAACCAACCCATTAACCCAATTCCCCAAACCCGAAACCAAAAAACCCAATCCCAATCTTCTTCATCTTCATCTTCTCGAAGCGGCATGAAATTAATCGTGCCTCTTCAAGGTGTAGTTCAAGGTCGTAGCGGTTTTCTCCTCGGTATTTCAATCCCTTGTGCTCTCTTTTACTTTCTTCAACTTTACCTCAAACGACGTCGTCCTAATCCTAACCCGTCTTCACCTTCTTCTTCCTCTTCTCCTACTCTTCTTCTTCCTCGCACTTCTTCTAGGTCCAATTTATCCTCTCGCGGATCCATTTCGCGTGTTCGCCTTTCCAAGCTCGCCACCATTTTATCTAAGCCTGATGATTCTCTTTATTATCTTGGCTTGGACAGGGTTTCCAAAGATCCTTATGATGTTCTTGTTAACCCTCATGGGATTATTCAGCTAGGCTTGTCTGATAATAAGTTGTGTTTTGATTTGATTGAGAAATGGTTGGTGAAGAATTTGGAGGGATCAATGATGGGGAATGGGGATATCAATTTGAGTATTAATGGGATTGTGCCTTATCAACCTCATCATGGATTGAATGAATTGAAAATTGCCTTGGCAGATTTTATGCGTCAGATTATGGGAGGATCAGTGGAATTTGACCCGTCGAATATGGTTCTAACATCGGGAGCAACTCCTGCAATTGAGATACTATCCTTCTGCTTGGCAGATCAAGGAAATGCGTTCCTTGTCCCTACGCCTTATTATCCAGGCTTTGACAGGGACATAAGATGGCGTCCAGGGATAGACTTAATACCTGTTCACTGTCGAAGTACTGACAATTTCAACTTAAACATCGCTGCTCTCGAGCAAGCGTATAGTCAAGCTAGAAAACGAGGAGTCAAAGTTCGCGGAATTCTCATCTCCAACCCTTCGAATCCCGTCGGCAATATTCTTACGCCAGATATGCTTTTCAGTCTTCTAGACTTTGCCGAAGATAAAAACATTCATATCATTGCCGACGAAGTATTTGCAGGCTCCACATATGGAAGTGAGGAGTTTGTGAGTATAGCTGAAGTTCTTGATTCAGAGTACATAGATAAAAGTCGTGTTCATATAATATACAGCTTGTCAAAAGACCTCTCGATTGCCGGCTTTAGAGTTGGGGTTATACATTCATACAACCAAGCTGTTCTGGAAGCTGCCAAAAAAATGAGTAGATTTTCATCTATATCCGCTCCAACACAGAGGTTAGTTACTTCAATGCTTTCCGATAAACGATTCATTCAGGAATACATTGAAACCAACCGGAATAGAATAAGACGCATACACGATGAGTTTGTGGATTGTTTAAACAAACTAGGAATCAAGTGTGCTAAGAGCAGCGCCGGTATGTTCTGTTGGGCCGATATGAGTGGATTAATCAAACCTTATAGCGAGAAAGGAGAACATGAATTATGGGAGAAGTTTATCAATGTTGCAAAGATCAATATAACTCCAGGGTCGGCTTGCCATTGCATAGAACCAGGATGGTTTCGTATTTGTTTTACAACTATTTCGTTCGAGGAAATTCCTCTAGTTATTGAACGGATTAGAAAAGTTGTTGAAAGTTGTAAATCTTCAAGTTGA 1617 0.4131 MTLTRNQPINPIPQTRNQKTQSQSSSSSSSRSGMKLIVPLQGVVQGRSGFLLGISIPCALFYFLQLYLKRRRPNPNPSSPSSSSSPTLLLPRTSSRSNLSSRGSISRVRLSKLATILSKPDDSLYYLGLDRVSKDPYDVLVNPHGIIQLGLSDNKLCFDLIEKWLVKNLEGSMMGNGDINLSINGIVPYQPHHGLNELKIALADFMRQIMGGSVEFDPSNMVLTSGATPAIEILSFCLADQGNAFLVPTPYYPGFDRDIRWRPGIDLIPVHCRSTDNFNLNIAALEQAYSQARKRGVKVRGILISNPSNPVGNILTPDMLFSLLDFAEDKNIHIIADEVFAGSTYGSEEFVSIAEVLDSEYIDKSRVHIIYSLSKDLSIAGFRVGVIHSYNQAVLEAAKKMSRFSSISAPTQRLVTSMLSDKRFIQEYIETNRNRIRRIHDEFVDCLNKLGIKCAKSSAGMFCWADMSGLIKPYSEKGEHELWEKFINVAKINITPGSACHCIEPGWFRICFTTISFEEIPLVIERIRKVVESCKSSS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04002 538 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 108 532 - -
Vifa1g04002 538 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g04002 538 SUPERFAMILY PLP-dependent transferases 114 532 IPR015424 -
Vifa1g04002 538 Gene3D - 169 421 IPR015421 GO:0003824
Vifa1g04002 538 Pfam Aminotransferase class I and II 147 527 IPR004839 GO:0009058|GO:0030170
Vifa1g04002 538 Coils Coil 275 295 - -
Vifa1g04002 538 MobiDBLite consensus disorder prediction 73 101 - -
Vifa1g04002 538 CDD AAT_like 189 529 - -
Vifa1g04002 538 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 372 385 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vifa1g04002 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 366 390 - -
Vifa1g04002 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 220 240 - -
Vifa1g04002 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 242 263 - -
Vifa1g04002 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 296 320 - -
Vifa1g04002 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 332 355 - -
Vifa1g04002 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 183 199 - -
Vifa1g04002 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 149 175 - -
Vifa1g04002 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 398 421 - -
Vifa1g04002 538 Gene3D Aspartate Aminotransferase, domain 1 135 526 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04002 Vifa-Chr1 615578705 615582003 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04002 K14270 - gmx:100811906 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04002 1 615578705 615582003 Vifa1g04002 1 615578705 615582003 ECH