Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03998 ATGGCCCTCGAAACTTTACTCTCAAGGCTTAAAACCGCATTTTCAAACAGCTTCGACTCAGTTCGACCCTCAAACAAAACGACACAGTCGTCTATCTCAAACCCAAAACGCATCGCCGTTCTAGCCTTCGAAGTCGCCGGAGTCATGTCGAAGCTTCTCCATCTCTGGCAATCCCTTTCCGACGCAAACATTCTCCGTCTTCAAAACGACGTCGTTTCACTCGAAGGCGTTTCGAAATTAGTCTCGAACGACCAGCCGTTTCTAATCAAACTCGCCGCTGCTGAGTTAGCCGACTCGCTCCGACTCGTTTCTGACTCGGTGTCACGACTCAGTATAAACTGCAATAACCCCACACTCAGATCCTTCCACCGAGTTTTCACTGAGTTCGCTGACTCGGGGTTTGACTCACTCGGTTGGACTCTCACATCCCCAAAAGAAATCGAATCCAAACACAGAAGAATGGAACGTTACGTGTCCCTCACGTTAACCCTTCATAAAGAAATCGATGAGCTTTCACTTTTACAAAGCGCGTTGAGAAAAGCACTTTTGAACAACAACAACAACAACAGCAACAAAAACAACAAAAGCAAAATCAGTGACCTTGAACAAATGATTTTCTGGCAGAAACAAGAGGTAAAGAATCTCAAAGAAAAATCATTATGGAACAAAGGTTTTGATAATGTTGTTTTGTTATTAGCTAGATTTGTTTTCACTCTGTTAGCAAGAATTAAGGTTGCTTTCGGAATCGGAAATGGACACAATTTACCTTATTTATCACGAAGTTTATCAGCTTCTGCTGCTGTTTATCCTTCTGATCATCAAAATAATCAAAAAATTGAAAGCTTTGTATCTGGGCCATTGAAAAGTTTCAATCTTGGTGAGAGAAAAGTGGATTTTGTAAATGGGTTTTTCGAGTCAAATTGTGAAGTTTTGAAACCACCACAAGGTAGTTTAGGTGATTCAGCTTTATCATTACATTATGCTAATTTGATTATTGTTATGGAAAAGATGATTAAATCACCACAATTAGTTGGTGTTGATGCAAGAGATGATTTGTATGCTATGTTACCAAATAGTATAAGATCATCATTGAGATTGAGGTTAAAAGGGTCGATTGGATTTTGTGCTTGTGATCCTTTATTGGCTTCTGAATGGAGAAATGCTTTGGGAAGGATACTTTGTTGGTTGTTACCTTTGGCACAAAACATGATTAGGTGGCAAAGTGAAAGGAGTCTTGAAGAGAAGAGTTTGGTTCCTAAGAAATCGAATGTGTTGCTTTTGCAAACTTTGTTTTTTGCTGATAAGGTGAAGACAGAAGCTGCTATTACTGAGTTGCTTGTTGGTTTGAATTATATTTGGAAGTTTGAGAGGGAAATGACTGCTAAGGCTTTGTTTGAATGCAACAATGATTTCAATGGGTTTTTGAGTTTGTACAAGCCTAAATAA 1446 0.3928 MALETLLSRLKTAFSNSFDSVRPSNKTTQSSISNPKRIAVLAFEVAGVMSKLLHLWQSLSDANILRLQNDVVSLEGVSKLVSNDQPFLIKLAAAELADSLRLVSDSVSRLSINCNNPTLRSFHRVFTEFADSGFDSLGWTLTSPKEIESKHRRMERYVSLTLTLHKEIDELSLLQSALRKALLNNNNNNSNKNNKSKISDLEQMIFWQKQEVKNLKEKSLWNKGFDNVVLLLARFVFTLLARIKVAFGIGNGHNLPYLSRSLSASAAVYPSDHQNNQKIESFVSGPLKSFNLGERKVDFVNGFFESNCEVLKPPQGSLGDSALSLHYANLIIVMEKMIKSPQLVGVDARDDLYAMLPNSIRSSLRLRLKGSIGFCACDPLLASEWRNALGRILCWLLPLAQNMIRWQSERSLEEKSLVPKKSNVLLLQTLFFADKVKTEAAITELLVGLNYIWKFEREMTAKALFECNNDFNGFLSLYKPK 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03998 481 Pfam Protein of unknown function (DUF668) 318 405 IPR007700 GO:0045927
Vifa1g03998 481 Pfam Domain of unknown function (DUF3475) 40 96 IPR021864 GO:0045927
Vifa1g03998 481 Coils Coil 198 218 - -
Vifa1g03998 481 PANTHER BNAC09G50660D PROTEIN 31 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03998 Vifa-Chr1 614990900 614992345 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03998 - - mtr:25497139 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03998 1 614990900 614992345 Vifa1g03998 1 614990900 614992345 ECH