Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03986 ATGAGTTTCGCCGCATACAAGATGATGCAATGGCCAACCGGCGTCGACAACTGCGCCTCCGGTTTCCTCACCCACTCCCGCTCCGATTTCACACCTCGCATCACTCCTCTTCAACCTGACGACGACCTTGACTCCGATTGGGTCCCGCAATCCCACAGCCTTGCTCCCGTTCCCAATCTCGTCATCACTGCTGCAAATGTTCTCGAAGTATACATAGTTCGTCTTCAACATGATCCTCCTAAATCCTCTGCGGATTCTAGTGCCCTAGATGGTGTCTCTGGTGCCTCGCTTGAGCTCGTTTGTCATTACAGGTTGCATGGCAATGTTGAAAGCGTGGCTGTGTTGAGCGTTGGTGGTGGTGCTGCTTCTAAAAGGCGAGATTCTATCATCTTAACTTTTAGAGATGCAAAGATTTCAGTTCTGGAGTATGATGATTCTATCCACGGACTTCGTACCAGTTCATTGCATTGTTTTGAGGGTCCCGAATGGCTTCATTTGAAAAGAGGCAGAGAACAATTTGCAAGAGGCCCGGTGGCAAAGGTTGATCCTCAAGGCAGGTGTGGTGGAGTTCTTGTCTATGATTTGCAAATGATAATACTAAAGACTAATCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGATGTGTCAGGTTCTGGAGGTGCTGTTCCTGCCCGTATTGACTCATCTTATATGATAAATCTGCGTGACTTGGATATGAGGCATGTAAAAGATTTCACATTTGTTCATGGCTATATTGAACCTGTGATGGTGATCTTGCATGAACGTGAGCTTACTTGGGCTGGGCGTGTCTCATGGAAACATCACACTTGCACTATATCAGCACTTAGCATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTCCCCCACGATGCGTACAAGCTTCTTGCAGTGCCCTCACCAATTGGTGGTGTTCTTGTCATTGGTGCAAACACTATTCATTATCATAGTCAGTCTGCTTCATGTGCACTGGCCTTGAACAGCTATGCTGTTTCCCCTGATAATAGTCAGGAGATGCCAAGATCAAGTTTCAATGTGGAACTTGATGCTGCCAATGCAACTTGGTTGTTGAATGATGTAGCCTTGCTGTCAACAAAAACTGGTGAACTTCTATTGCTTACTCTTATTTATGATGGAAGGGTTGTACAAAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTATCTTCTGGTATTACGACAATTGGAAATTCTATGTTTTTTCTCGCCAGTCGATTAGGAGACAGTATGCTGGTACAATTTTCATGTGGATCGGGTGTTTCAATGCTGTCATCGGGTTTAAAAGAAGAGGTTGGTGATTATGACATAGATGCTTCTTCAGCAAAGAGATTGCGGAGGTCACCTTCTGATACTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCTTTGTATGGATCTGCTCCAAATAGAACAGAATCAGCACAGAAATCATTCTCATTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTCTCATACGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGTTGTTCTGGTCATGGAAAGAACGGTTCCCTGTGTGTTCTTCGACAATCAATTCGCCCAGAAGTGATTACCGAGGTTGAACTTCCTGGCTGCAAAGGAATTTGGACCGTTTATCATAAGAGCACACGTTCACATAATGCCGACTCTTCTAAGCTGGCGGATGATGAAGATGAGTATCATGCGTACCTTATTATAAGTTTGGAGTCTCGTACTATGGTACTAGAAACCGCTGATCTTCTGAGTGAGGTTACTGAAAGTGTTGACTATTATGTTCAAGGAAAAACGCTTGCTGCAGGAAATTTATTTGGAAGGCGTCGTGTTATTCAAGTCTATGAACGCGGTGCTCGAATCCTGGACGGTTCTTTTATGACCCAAGATGTAAGCTTTGGAGCTTCTAACTCTGAATCTAGTTATGGATCTGAGAGTGCTTTGGCACTATCCGTTTCTATTGCTGATCCATATGTATTGCTCAGAATGAGTGATGGAAGTGTTCGACTTTTGGTTGGAGATCCTAGCGCCAGCACCATTTCTGTCACTTCTCCTGCTTCATTTGAGAGCTCAAAAGGGTCAGTTTTATCATGTACACTCTATCATGATAAAGGACCCGAGCCATGGCTAAGAAAGACAAGTACTGATGCATGGCTTTCTACTGGTGCTGGTGAGGCCATTGATGGCACTGATGGTGCAGCTCAGGACCATGGGGATGTTTATTGTGTTGTATGTTACGAAAATGGCAACCTTGAAATATTTGATGTGCCCAATTTCATTTGTATTTTTTCTGTGGAAAATTTTCTGTCTGGAAAGAGCCACCTGGTTGATGCTCTAACAAAAGAGGTGCCAAAAGATTCTCAAAACGGGGACAGAGTTTCTGATGGAGGAATCAGCCAAGGCAGGAAGGATGCCCTAAATATGAAGGTTGTGGAGTTGGCCATGCATAGATGGTCAGGGAAGCATACCCGTCCTTTTCTTTTTGGTATTTTAAGTGATGGAACAATTCTTTGTTACCATGCATACCTTTATGAAAGTCCAGATGGTACTTCTAAGGTTGAGGATTCGGTATCAGCTGGTGGCAATACTAGTGTTTCTAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGACGTACATGCAAAGGAGGAGACTTCAAATGGATCACCTTGTCAACAAATTAATATTTTCAAGAATATTAGCAGTCATCAAGGATTCTTTCTATCGGGGTCAAGACCGGCATGGGTTATGGTGTTGAGAGAGCGGCTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTCCTTCACAACATAAACTGCAATCATGGCCTCATATATGTTACGTCACAGGGTGTTTTAAAGATATGCCAAATGCCTTCTGGCTCAAACTATGATTGCTACTGGCCTGTACAGAAAGTTCCTCTAAAAGCTACTCCACATCAAGTAACCTACTACGCAGAGAAGAATTTGTATCCAATTATTGTTTCATTTCCCGTTCTTAAGCCAATAAATCAAGTCATTGCTTTAGTTGACCCAGATGCCAACCATCTGGCTGAGAGTCAGAATTTGAATTCAGACGAGCAAAACCGCTCTTATAGCATCGAAGAATTTGAGGTTCGTATTATGGAGCCAGAAAAATCGGGTGGCCCTTGGCAAACAAAGGCAACAATACCCATGCAAAGTTCAGAAAATGCTCTCACTGTTAGGATGGTTACACTTTTGAATACATCGTCAAAAGAAAACGAAACACTTTTAGCCGTTGGTACTGCTTACGTGCAAGGAGAGGATGTTGCTGCAAGAGGGCGTATACTCTTGTTCTCTTTGGGGAAAAATACTGATAATCCACAAGCTCTGGTTTCAGAGGTGTACTCGAAGGAATTAAAAGGTGCTATATCTGCCATGGCCTCACTTCAAGGTCATCTATTAGTAGCATCTGGTCCAAAAATAATCCTGCATAAGTGGACCGGCACTGAGTTGAATGGTGTTGCATTTTTCGATGTGCCACCATTGCATGTTGTGAGCTTAAATATTGTAAAGAATTTCATCCTTATTGGTGACATCCATAAGAGTATATATTTTCTTAGTTGGAAAGAGCAGGGTTCTCAACTTAGTTTATTAGCCAAGGATTTTGGTTCTCTTGATTGTTTTGCCACAGAATTTTTGATTGATGGAAGTACTCTGAGTCTCATGGTTTCAGATGATCAAAAAAATATACAGATTTTCTACTATGCGCCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCCGAGTTTCATGTTGGGGCCCATGTGACTAAATTCTTAAGGCTGCAGATGTTATCCACTTCTGATCGAACTGGTTCTGCTCCAGGCTCAGACAAAACAAATCGTTTTGCCTTGTTATTCGGTACATTGGATGGTAGTATCGGTTGCATTGCTCCTCTTGATGAAATCACATTCCGTAGACTGCAGTCTTTGCAGAGAAAGCTCGTTGATGCTGTACCCCACGCTGCTGGCTTAAATCCAAGAGCGTTCAGACGGTTCCATTCGAATGGAAAGGCCCATCGACCAGGTCCCGACAGTATTGTTGATTGCGAGCTGCTATGCCATTATGAAATGCTTCAATTGGAGGAACAACTTGAAATTGCTCACCAGGTTGGAACAACTCGATCACAAATTCTCTCAAATCTAAATGATCTATCTCTTGGAACAAGCTTCTTGTGA 4335 0.4288 MSFAAYKMMQWPTGVDNCASGFLTHSRSDFTPRITPLQPDDDLDSDWVPQSHSLAPVPNLVITAANVLEVYIVRLQHDPPKSSADSSALDGVSGASLELVCHYRLHGNVESVAVLSVGGGAASKRRDSIILTFRDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVAKVDPQGRCGGVLVYDLQMIILKTNQAGSGLVGEDDVSGSGGAVPARIDSSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCTISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVSPDNSQEMPRSSFNVELDAANATWLLNDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLSSGITTIGNSMFFLASRLGDSMLVQFSCGSGVSMLSSGLKEEVGDYDIDASSAKRLRRSPSDTLQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKLADDEDEYHAYLIISLESRTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESSYGSESALALSVSIADPYVLLRMSDGSVRLLVGDPSASTISVTSPASFESSKGSVLSCTLYHDKGPEPWLRKTSTDAWLSTGAGEAIDGTDGAAQDHGDVYCVVCYENGNLEIFDVPNFICIFSVENFLSGKSHLVDALTKEVPKDSQNGDRVSDGGISQGRKDALNMKVVELAMHRWSGKHTRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVSAGGNTSVSRLRNLRFVRVPLDVHAKEETSNGSPCQQINIFKNISSHQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNINCNHGLIYVTSQGVLKICQMPSGSNYDCYWPVQKVPLKATPHQVTYYAEKNLYPIIVSFPVLKPINQVIALVDPDANHLAESQNLNSDEQNRSYSIEEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTSSKENETLLAVGTAYVQGEDVAARGRILLFSLGKNTDNPQALVSEVYSKELKGAISAMASLQGHLLVASGPKIILHKWTGTELNGVAFFDVPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRTGSAPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHAAGLNPRAFRRFHSNGKAHRPGPDSIVDCELLCHYEMLQLEEQLEIAHQVGTTRSQILSNLNDLSLGTSFL 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03986 1444 Pfam CPSF A subunit region 1077 1409 IPR004871 GO:0003676|GO:0005634
Vifa1g03986 1444 Gene3D - 54 443 IPR015943 GO:0005515
Vifa1g03986 1444 Gene3D - 966 1351 IPR015943 GO:0005515
Vifa1g03986 1444 FunFam Cleavage and polyadenylation specificity factor subunit 1 55 442 - -
Vifa1g03986 1444 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 12 1430 - -
Vifa1g03986 1444 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 168 668 IPR018846 -
Vifa1g03986 1444 FunFam cleavage and polyadenylation specificity factor subunit 1 966 1351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03986 Vifa-Chr1 612504280 612526524 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03986 K14401 - gmx:100785543 2550.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03986 1 612504280 612526524 Vifa1g03986 1 612504280 612526524 ECH