Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03982 ATGGCTTCCATTCCCACTTTCTCTTCTTCTTCTTCTTCTTCTTCTCTTCTACTCAAACCCAACGCCAACACACTCTTTCCCCATTCAAACTCCTCACATTCACACCTCAACAACAACCAATCACGCACTCTCTCTTTCACTTCTCTCTTTCCAACAAAACTCACCCTTCAACGACCCATTTCCTCAACTCGTTCAATTTCCATCACCAACTGCCGTGCTTCCTCTGCAACGGTTCCGTCTAGCCTCCCTACCGACCCGAATCCACAATCTGGTGAACCACAGAAAACCCCAAATCCAAAGTGGTCGGCGAGAGCTGTAAAAGCATATGCAATGGCAGAATTGGAAGCAAGGAAGCTTAAGTATCCTAAAGTAGGGACTGAGGCTCTCCTCATGGGGATTTTAGTTGAAGGAACAAGTAAAACTGCAAAATTCTTGAGAGCTAATGGAATTACTTATTTGAAAGTACGCCGACAAACATTAGAGCTACTTGGAAAATCTGACTATTCCTTCGCCAGCCCTGTAATTCCTTCTTTGACTGAACCACTTCAGAAAGCCCTCGATTGGGCAATTAACGAGAAATTAAAGTCAGGTGAAGAAGGAGAAACAAACGTGACTCATTTACTTGGTGGAATTTGGTCACAAGAAGAATCGGCAGGTCGAAAGGTCTTGTCTGCTTTGGGTTTCAACGTTGAAAAGGCCGCAGAAATCGCTAAAACAGCAGCTAGTGGAGATATTGATTGGAATTTCTAG 750 0.44 MASIPTFSSSSSSSSLLLKPNANTLFPHSNSSHSHLNNNQSRTLSFTSLFPTKLTLQRPISSTRSISITNCRASSATVPSSLPTDPNPQSGEPQKTPNPKWSARAVKAYAMAELEARKLKYPKVGTEALLMGILVEGTSKTAKFLRANGITYLKVRRQTLELLGKSDYSFASPVIPSLTEPLQKALDWAINEKLKSGEEGETNVTHLLGGIWSQEESAGRKVLSALGFNVEKAAEIAKTAASGDIDWNF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03982 249 Gene3D - 100 246 IPR036628 -
Vifa1g03982 249 SUPERFAMILY Double Clp-N motif 100 198 IPR036628 -
Vifa1g03982 249 MobiDBLite consensus disorder prediction 74 97 - -
Vifa1g03982 249 ProSiteProfiles Clp repeat (R) domain profile. 98 244 IPR004176 -
Vifa1g03982 249 MobiDBLite consensus disorder prediction 74 101 - -
Vifa1g03982 249 Pfam Clp amino terminal domain, pathogenicity island component 112 164 IPR004176 -
Vifa1g03982 249 Pfam Clp amino terminal domain, pathogenicity island component 206 236 IPR004176 -
Vifa1g03982 249 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 29 241 IPR044217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03982 Vifa-Chr1 612082477 612095527 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03982 - - gmx:100786582 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03982 1 612082477 612095527 Vifa1g03982 1 612082477 612095527 ECH