Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03922 ATGTCTCGATTCATCTCGAGATGCAAAAAAATGAAGGAAATGACGCAATTTCCTGGGACCCACATGGTTGTTGAATCGGGTAACTGTCGAACCGGTTTCGGTTTAACAAGCCGGTTCAACCGGGCTCATCCAATTTCAACTCACTTGAATCACATCATTGTCGCCGGAGTTGGTAAACATCGCCGCCGGGAGGATTTAATCGGAGTTCAGGAACGGTACAAGTGGGACCGTGGCGGGTCAGATGATAATGCTCATAGCCCGACCAGGAAGATTCGGGCTGAGGCTAATTGTCCTCGGTGTTCTAAAGATATGAACTTGTTCTTTTCCAATCGCCATTTTCCATCCACTAGTGATTCTGATTGTGGTGGTGGTAATGGTGGCGGTGGTGGTTCGAATTCGGGTGGTAGTGGAGAGAGTGGTTACCAAGCAGTAAATCTATGTCCAAACTGTAAAACAGCATATTATTTTCGTCCTTACAACACATCACCATTACAAGGTACATTTGTGGAGATTGGTAGAGTAACTAATAGTAATAATAATGGTGCTAGTGCTAGTAAATCTCAATTATCTAGGAGGGTAAGAAACGGTGGTGGAAAAGATGGTGGTAGTAATAGTAATAGTATTAAGAATGGTTTTGGAGGTGATGAATTTGGTCTTAAAGGTAGTGCTAGTAATTGGCTTGAAATTTCATTATGGGATACTTTGAAATCTTACAATGGTGGTGGTAGAAATGGTGATGGTAATAATGGGGAGCCGCCGGAGACATGGCCTCCACCGGCGGGTGGTGGGAATGGGAATGGTTTGGCTGTGCATACTCCTCCGGGTCCTCCTTTTGCACCGGGGGTTAATGTTGTTCGGGCTTCGGGGCCACGGGAAGGTGGCCATGGAGAGAAGGCCTCATGGGGAGGGTCTAATTTGGGGAAGGACTTGCCTACACCAAAGGAGATTTGTAAGGGTCTTGATAAGTTTGTTATTGGACAAGGTAGAGCCAAGAAGGTGCTTTCTGTAGCGGTTTATAACCACTATAAAAGAATATACCATGCAACTCTGCCGAAAGGGTTGGGTGCAGCAGACTCAGGAATTTCAGACGTATTTGATGATGACGAAAATGTCGAGCTAGAAAAGAGTAACGTTCTTTTGATGGGTCCAACAGGATCAGGGAAGACATTACTTGCAAAAACACTAGCCCGATTTGTGAATGTTCCGTTTGTCATCGCCGATGCAACAACTTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATACTACATAAACTACTTGCGGCAGCAGATTACAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAGATAACAAAGAAGGCCGAGAGCTTAAATATCAGCCGAGATGTTTCCGGCGAGGGTGTTCAGCAGGCATTATTAAAAATGCTAGAAGGAACTATGGTAAATGTTCCGGAGAAAGGAGCCCGGAAACATCCACGAGGCGATAACATTCAGATGGACACAAAGAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTCGAAAAAACGATCTCAGAGAGACGGCAAGATTCTTCAATTGGTTTTGGAGCACCGGTTCGTGCCAACATGAGAACCGGCAGAATAATAGATTCTTCAGTAGCATCATCTTTACTTGCAACGGTGGAGAGTTCTGATCTAATTGCATATGGACTCATACCAGAGTTTATCGGACGATTCCCCATCTTAGTTAGCTTGTCAGCCTTAACCGAAGAGCAACTTATGCAGATCCTCGTAGAACCAAAACACGCTCTTGGTAAACAGTACAAGAAATTAGTTAGCATGAATAACGTAAAGCTACACTTCACAGAAAAAGCTCTGAAGCTAATAGCAAAGAAAGCAATGTCAAAAAATACCGGTGCAAGGGGTTTAAGAGCCTTAATAGAAAACATTTTAACCGATGCCATGTTTGAGATTCCGGATATTAAGACAGGAAGCGAGCGTGTTGACGCTGTAGTTGTTGATGAAGAATCAGTAGGATCACTAACGGCTCCGGGATGTGGCGGGAAAATTCTCCGCGGAGATGGTGCTTTGGAGAAGTACCTAGCTAAGACAAAGGATTCAGAGGCGAATGAGGAAGAATCGGAGTTTCAAGAGAGAGATTCAGATATTTCATCGAGAGCGATGAGCTTGTAA 2184 0.4377 MSRFISRCKKMKEMTQFPGTHMVVESGNCRTGFGLTSRFNRAHPISTHLNHIIVAGVGKHRRREDLIGVQERYKWDRGGSDDNAHSPTRKIRAEANCPRCSKDMNLFFSNRHFPSTSDSDCGGGNGGGGGSNSGGSGESGYQAVNLCPNCKTAYYFRPYNTSPLQGTFVEIGRVTNSNNNGASASKSQLSRRVRNGGGKDGGSNSNSIKNGFGGDEFGLKGSASNWLEISLWDTLKSYNGGGRNGDGNNGEPPETWPPPAGGGNGNGLAVHTPPGPPFAPGVNVVRASGPREGGHGEKASWGGSNLGKDLPTPKEICKGLDKFVIGQGRAKKVLSVAVYNHYKRIYHATLPKGLGAADSGISDVFDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILHKLLAAADYNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTMVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGRIIDSSVASSLLATVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLMQILVEPKHALGKQYKKLVSMNNVKLHFTEKALKLIAKKAMSKNTGARGLRALIENILTDAMFEIPDIKTGSERVDAVVVDEESVGSLTAPGCGGKILRGDGALEKYLAKTKDSEANEEESEFQERDSDISSRAMSL 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03922 727 Pfam C-terminal, D2-small domain, of ClpB protein 585 655 IPR019489 -
Vifa1g03922 727 MobiDBLite consensus disorder prediction 701 727 - -
Vifa1g03922 727 SMART ClpB_D2_small_2 585 675 IPR019489 -
Vifa1g03922 727 CDD RecA-like_ClpX 311 582 - -
Vifa1g03922 727 Gene3D - 584 684 - -
Vifa1g03922 727 MobiDBLite consensus disorder prediction 242 264 - -
Vifa1g03922 727 Pfam AAA domain (Cdc48 subfamily) 374 578 IPR003959 GO:0005524|GO:0016887
Vifa1g03922 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 671 IPR027417 -
Vifa1g03922 727 SMART AAA_5 374 570 IPR003593 GO:0016887
Vifa1g03922 727 MobiDBLite consensus disorder prediction 177 208 - -
Vifa1g03922 727 Gene3D - 304 583 IPR027417 -
Vifa1g03922 727 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 304 583 - -
Vifa1g03922 727 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 307 676 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Vifa1g03922 727 MobiDBLite consensus disorder prediction 116 138 - -
Vifa1g03922 727 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 584 687 - -
Vifa1g03922 727 MobiDBLite consensus disorder prediction 177 192 - -
Vifa1g03922 727 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 92 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03922 Vifa-Chr1 602827305 602832927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03922 378 477 Miscellaneous Gene Families AT3G02450 37.624 2.55e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03922 K03544 - gmx:100805340 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03922 1 602827305 602832927 Vifa1g03922 1 602827305 602832927 ECH