Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03879 ATGGCTTTGAAGGATACGTTTTACATCTCACATGGATCGCCAACGTTGTCGATAGATGAATCGATTGTGGCGAGGAAGTTTCTACAATCATGGAAGAAGGACGTGTATGGGGAGAAACCTAAATCGATTTTGATTATTTCTGGTCATTGGGATACGACTGTTCCGACCGTTAACGTTATTCAGAAAAACAATGATACCATCTATGACTTCTATGGTTTTCCCAAACCTATGTACCAGCTTAAATACCCAGCACCTGGAGCTCCAGATTTAGCCAAAAGAGTGAAGGAACTACTCAAAAACTCGGGTATCAACCGTGTCGACGAAGACAAAAAGCGAGGACTTGATCATGGTGCTTGGGTTCCACTCATGTTAATGTATCCAGAAGCAGACATTCCTGTTTGTCAGCTTTCTGTTCAATCTCGCATGGATGGAACTTACCATTACAACATAGGAAAAGCATTGGCACCTCTTAAAGATGAAGGTGTATTGATAATAGGTTCCGGAAGTGCTGTTCATAATTTGGGAGCAATTAACCCTCGTGGCGGTGTTGCTCCTTGGGCCTTGGAATTCGATAATTGGTTGAAAGACGCTCTTCTTGATGGAAGATATGAAGATGTGAATCGTTATGAACAAAAGGCGCCGCATGCCAGAAAGGCTCATCCACATCCAGATCATTTTTATCCATTGCATGTTGCAATTGGTGCGGCTGGTGGAAATTCAAAGGCTAAACTTATCCATAGTAGTATTGAAATGGGAACTCTCTCTTATGCTTCTTACCAGTTTACATCACATTCCAACTAA 801 0.4195 MALKDTFYISHGSPTLSIDESIVARKFLQSWKKDVYGEKPKSILIISGHWDTTVPTVNVIQKNNDTIYDFYGFPKPMYQLKYPAPGAPDLAKRVKELLKNSGINRVDEDKKRGLDHGAWVPLMLMYPEADIPVCQLSVQSRMDGTYHYNIGKALAPLKDEGVLIIGSGSAVHNLGAINPRGGVAPWALEFDNWLKDALLDGRYEDVNRYEQKAPHARKAHPHPDHFYPLHVAIGAAGGNSKAKLIHSSIEMGTLSYASYQFTSHSN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03879 266 SUPERFAMILY LigB-like 6 261 - -
Vifa1g03879 266 PIRSF Doxgns_DODA 1 263 IPR014436 GO:0008270|GO:0016701
Vifa1g03879 266 PANTHER UNCHARACTERIZED 4 264 - -
Vifa1g03879 266 CDD 45_DOPA_Dioxygenase 6 261 IPR014436 GO:0008270|GO:0016701
Vifa1g03879 266 Gene3D - 2 262 - -
Vifa1g03879 266 Pfam Catalytic LigB subunit of aromatic ring-opening dioxygenase 6 261 IPR004183 GO:0006725|GO:0008198|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03879 Vifa-Chr1 597685663 597686694 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03879 K15777 - gmx:100798236 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03879 1 597685663 597686694 Vifa1g03879 1 597685663 597686694 ECH