Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03775 ATGAAGAAGCAACTAGCACCACTTGTTCTATTCTCTCTTACACTAGTAATATCACTTTTTCATTCAACCACCGCCGGTGCCGCCACCTCAGGCAGCCATAACATCACCCGCATTCTCGCCAAACACCCTGGTTTCTCCACCTTCAACCACTACCTCACCATCACTCATCTCGCAGACGAAATCAACCGCCGTCAAACCATCACGATCCTCGCCATCGATAATGCCGCCATGTCGTCGCTCCTCGACAAACACCTCTCCGTCACCACACTCAAAAACGTCCTCTCCCTCCACGTCTTAGTCGACTACTTCGGGGCCAAAAAACTCCACCAAATCACCAACGGAACAACTCTTGTTTCCTCCATGTTTCAAGCAACCGGAGCCGCCGCGGGAACCGCCGGATACGTCAACGTCACGAATCTCAAAGGCGGCAAAGTCGGTTTCGCCGCCGAAGACAACGACGGCCTACATTCTTTCTACGTGAAATCCGTTGAAGAACTTCCTTACGTCATCTCCGTACTTCAAATCAGTCAACCTCTCAGCTCCGCCGACGCCGAAGCACCGACGGCATCTCCGAGCGATATCGATCTAATCTCAATCATGTCAAAACAAGGTTGCAAAGCCTTCGCCGATTTGCTCCGAGTTTCAAAAGCTCTTCCAACTTTCAAAGACACCGTAGACGGTGGCTTAACCGTTTTCTGTCCAACTGACAGCGCCGTTAACGGTTTCTCCGCTAAATACAAAAACCTAACCGACGCAAAGAAAGTTTCACTTCTTTTATATCACGGAGTTCCCGTTTACCAATCGTTACAGATGCTAAAATCAAACAACGGTATAATGAACACGTTAGCAACAGAAGGTGCTAACAAATACGATTTCACCGTGCAAAACGACGGTGAAGACGTTAACCTTGAAACCAAGGTTAACACCGCGAACATTATCGGAACATTGATCGATCAAGATCCGTTTGTGGTGTACAAGATCAACAAGGTTTTGATGCCGAGAGAGTTGTTTAAGGGAGTTAAGGAGGAATTAGCACCGGCTGAGTCACCGAAGGCGGCAAAGAAGAAGAGCAAGAAGAAAGGTAAGGCGGCGGCGGATGAAGATGCGGATTCACCGGCGGCTGATGGACCGGATGCAGATGATTCAGATTCCGATGATCAGAAAGCTGCTGACGATAATGGAGTGAGTGGATTAAATCAAGGGTTCAGATTCATTATGGTAATTTTCAGTTTGATTATTGGAGCTTTGGTTTAA 1254 0.4785 MKKQLAPLVLFSLTLVISLFHSTTAGAATSGSHNITRILAKHPGFSTFNHYLTITHLADEINRRQTITILAIDNAAMSSLLDKHLSVTTLKNVLSLHVLVDYFGAKKLHQITNGTTLVSSMFQATGAAAGTAGYVNVTNLKGGKVGFAAEDNDGLHSFYVKSVEELPYVISVLQISQPLSSADAEAPTASPSDIDLISIMSKQGCKAFADLLRVSKALPTFKDTVDGGLTVFCPTDSAVNGFSAKYKNLTDAKKVSLLLYHGVPVYQSLQMLKSNNGIMNTLATEGANKYDFTVQNDGEDVNLETKVNTANIIGTLIDQDPFVVYKINKVLMPRELFKGVKEELAPAESPKAAKKKSKKKGKAAADEDADSPAADGPDADDSDSDDQKAADDNGVSGLNQGFRFIMVIFSLIIGALV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03775 417 ProSiteProfiles FAS1/BIgH3 domain profile. 192 331 IPR000782 -
Vifa1g03775 417 SMART fasc_3 68 182 IPR000782 -
Vifa1g03775 417 SMART fasc_3 230 334 IPR000782 -
Vifa1g03775 417 MobiDBLite consensus disorder prediction 347 393 - -
Vifa1g03775 417 MobiDBLite consensus disorder prediction 371 387 - -
Vifa1g03775 417 SUPERFAMILY FAS1 domain 38 151 IPR036378 -
Vifa1g03775 417 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 397 IPR033254 -
Vifa1g03775 417 FunFam Fasciclin-like arabinogalactan protein 10 185 334 - -
Vifa1g03775 417 ProSiteProfiles FAS1/BIgH3 domain profile. 32 198 IPR000782 -
Vifa1g03775 417 FunFam Fasciclin-like arabinogalactan protein 2 31 172 - -
Vifa1g03775 417 Gene3D FAS1 domain 197 333 IPR036378 -
Vifa1g03775 417 Gene3D FAS1 domain 32 164 IPR036378 -
Vifa1g03775 417 SUPERFAMILY FAS1 domain 189 334 IPR036378 -
Vifa1g03775 417 Pfam Fasciclin domain 44 123 IPR000782 -
Vifa1g03775 417 Pfam Fasciclin domain 205 333 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03775 Vifa-Chr1 583223659 583224912 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03775 - - gmx:100799605 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03775 1 583223659 583224912 Vifa1g03775 1 583223659 583224912 ECH