Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03692 ATGCACAGACTCTCCAACCGCTCTTCCTCCGTCTCAGCCCTACTCCGTTACGGCGGCGCTGTTCGCCGTAACGCCGCTCTCCCACTTTCCACTTCTCACTCTCATTTGGAGCAGGTGGGAGATAATGACACAAAATCCAGATGGTATTCAATATTAAGTTCTGAGAAATCCGGCAGTGTTAATCAACTAAACTCGAAAAGCGATTTGTTTTTGGGAAAACGATATGAATCAACTGTTGCGGAATCTAGTGCATCAAGTTCCCCACCTGCTGAGAAATTTGAGTACCAAGCAGAGGTTAGTCGGCTCATGGACCTCATTGTTAATAGTTTATACAGTAACAAGGAAGTGTTTCTCAGGGAACTTATCAGTAATGCAAGTGATGCCTTGGATAAGCTGCGGTTTTTGAGTGTTACAGAGCCTGACCTAATGAAGGATGCGATTGATTTTGATATCCGAATTCAAGCTGATAAAGATAATGGGATCATCACTATTACTGATACAGGCATTGGTATGACTAAGCAGGAACTAGTTGACTGTCTTGGAACTATTGCTCAAAGTGGAACTGCTAAGTTTTTGAAGTCTCTCAAGGATAGTAAGGGTGCTGGCGGTGACAACAACTTAATTGGTCAATTTGGTGTGGGATTTTATTCTGCTTTTCTAGTTGCTGATCGGGTGGTTGTCTCAACCAAGAGTCCAAGATCAGATAAACAATACGTTTGGGAAGGAGAGGTAAATGCTAGCTCATATACCATATCTGAGGAGACAGATCAGGAAAAGCTGATTCCAAGAGGAACTCGCCTTACCCTGCATCTTAAGAGGGATGACAAAGGTTTTGCTCATCCAGAGCGAATTGAGAAGCTTGTGAAAAACTACTCCCAATTTGTCTCATTCCCAATATACACTTGGCAGGAAAAGGGATTCACCAAAGAAATAGAGGTTGACGAGGGTCCAGCTGAGGCGAAAACAGACACCCAAGATGAGAAGACTGAGAAGAAGAAGAAAACTAAGACTGTTGTCGAGAAGTATTGGGACTGGGAGCTCACAAATGAGACACAACCTATCTGGCTTCGTAATCCTAAAGAAGTCACCAAAGAGGACTACAACGAGTTTTACAAGAAAACATTTAATGAATACCTGGAGCCATTGGCATCATCACACTTTACCACAGAGGGTGAGGTAGAATTTAGGTCTATACTTTATGTTCCTCCCTATGCTCCATCAGGGAAGGATGATGTAATCAATCCCAAGACCAAGAATATAAGACTTTATGTGAAGAGAGTATTTATTTCAGATGACTTTGATGGAGAACTGTTCCCAAGATACTTAAGTTTTGTCAAAGGTGTGGTTGACTCAAATGACCTTCCACTCAATGTGTCACGTGAAATCCTTCAAGAGAGTCGCATAGTGCGGATTATGAGGAAGCGGTTGGTCAGAAAGGCTTTTGATATGATTTTGGGGATATCCATGAGTGATAATAGAGAGGACTATGAGAAGTTCTGGGATAACTTTGGCAAACACTTGAAATTGGGTTGCATTGAAGACCGAGAGAATCACAAACGCATTGCTCCGTTGCTTCGGTTTTTCTCATCCCAAAGTGAGGAAGAATTTATCAGCTTGGATGAATATGTTGAGAACATGAAACCTGATCAAAAGGATATTTATTACATTGCTGCTGACAGTGTGAATAGTGCAAAGAACACACCTTTCTTGGAGAAACTTGCAGAGAAGGATCTTGAAGTGCTGTTTTTGGTGGATCCAATAGACGAGGTTGCCATCCAAAATATTAAATCATACAAGGAAAAGAATTTTGTTGATATTAGCAAGGAAGACTTGGATCTAGGTGACAAAAATGAGGAAAAGGAAAAGGAGATGAAGCAGGAATATAGCGGGACAATTGATTGGATTAAGAAACGCTTGGGTGATAAAGTTGCAAGTGTGCAGATCTCAAACCGATTGAGCTCTTCGCCTTGTGTCCTGGTGTCAGGAAAATTTGGTTGGTCTGCAAACATGGAAAGGCTAATGAAGTCACAAACTATGGGTGATGCTACTAGCTTGGAATTCATGAGAAGCAGAAGGGTGTTTGAGATCAACCCTGAACATCCTATTATCAAGGACTTGGATGCTGCTTGTAAAACTAATCCTGATGATCAAGAGGCCCTCAGAGCTATTGATCTTCTGTACGATGCAGCTTTGGTTTCCAGTGGGTTTACGCCTGATAATCCAGCACAGCTTGGGGGAAAGATATACGAGATGATGGGTATGGCTCTCAATGGTAAATGGTCATCTCCTCCAAGTCAGTTTGAGTCCACTCAAACTCAACCCCATGTTCTAGAAACTGAAGAAGCTGAAGTGGTCGAGCCAACTGAAGCTGGCAGTCAAAAGTGA 2385 0.4222 MHRLSNRSSSVSALLRYGGAVRRNAALPLSTSHSHLEQVGDNDTKSRWYSILSSEKSGSVNQLNSKSDLFLGKRYESTVAESSASSSPPAEKFEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRFLSVTEPDLMKDAIDFDIRIQADKDNGIITITDTGIGMTKQELVDCLGTIAQSGTAKFLKSLKDSKGAGGDNNLIGQFGVGFYSAFLVADRVVVSTKSPRSDKQYVWEGEVNASSYTISEETDQEKLIPRGTRLTLHLKRDDKGFAHPERIEKLVKNYSQFVSFPIYTWQEKGFTKEIEVDEGPAEAKTDTQDEKTEKKKKTKTVVEKYWDWELTNETQPIWLRNPKEVTKEDYNEFYKKTFNEYLEPLASSHFTTEGEVEFRSILYVPPYAPSGKDDVINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSDNREDYEKFWDNFGKHLKLGCIEDRENHKRIAPLLRFFSSQSEEEFISLDEYVENMKPDQKDIYYIAADSVNSAKNTPFLEKLAEKDLEVLFLVDPIDEVAIQNIKSYKEKNFVDISKEDLDLGDKNEEKEKEMKQEYSGTIDWIKKRLGDKVASVQISNRLSSSPCVLVSGKFGWSANMERLMKSQTMGDATSLEFMRSRRVFEINPEHPIIKDLDAACKTNPDDQEALRAIDLLYDAALVSSGFTPDNPAQLGGKIYEMMGMALNGKWSSPPSQFESTQTQPHVLETEEAEVVEPTEAGSQK 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03692 794 Gene3D - 609 756 IPR037196 -
Vifa1g03692 794 ProSitePatterns Heat shock hsp90 proteins family signature. 111 120 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vifa1g03692 794 FunFam Heat shock protein 90 alpha 609 757 - -
Vifa1g03692 794 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 83 768 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa1g03692 794 MobiDBLite consensus disorder prediction 759 794 - -
Vifa1g03692 794 SUPERFAMILY Ribosomal protein S5 domain 2-like 351 609 IPR020568 -
Vifa1g03692 794 Pfam Hsp90 protein 278 771 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa1g03692 794 Gene3D - 77 318 IPR036890 -
Vifa1g03692 794 PRINTS 90kDa heat shock protein signature 208 230 IPR020575 -
Vifa1g03692 794 PRINTS 90kDa heat shock protein signature 281 299 IPR020575 -
Vifa1g03692 794 PRINTS 90kDa heat shock protein signature 91 111 IPR020575 -
Vifa1g03692 794 PRINTS 90kDa heat shock protein signature 161 178 IPR020575 -
Vifa1g03692 794 PRINTS 90kDa heat shock protein signature 263 280 IPR020575 -
Vifa1g03692 794 PRINTS 90kDa heat shock protein signature 112 134 IPR020575 -
Vifa1g03692 794 PRINTS 90kDa heat shock protein signature 179 196 IPR020575 -
Vifa1g03692 794 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 91 305 IPR036890 -
Vifa1g03692 794 PIRSF HSP90_HTPG 54 794 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa1g03692 794 Gene3D - 522 608 - -
Vifa1g03692 794 Hamap Chaperone protein HtpG [htpG]. 88 753 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vifa1g03692 794 FunFam heat shock protein 90-5, chloroplastic 349 521 - -
Vifa1g03692 794 FunFam heat shock protein 90-5, chloroplastic 78 320 - -
Vifa1g03692 794 CDD HATPase_Hsp90-like 100 295 IPR020575 -
Vifa1g03692 794 MobiDBLite consensus disorder prediction 759 777 - -
Vifa1g03692 794 FunFam Heat shock protein 90 522 608 - -
Vifa1g03692 794 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 113 273 IPR003594 -
Vifa1g03692 794 SUPERFAMILY HSP90 C-terminal domain 632 752 IPR037196 -
Vifa1g03692 794 Gene3D - 349 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03692 Vifa-Chr1 570411509 570417980 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03692 K09487 - gmx:100806710 1299.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03692 1 570411509 570417980 Vifa1g03692 1 570411509 570417980 ECH