Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03684 ATGGCACAAAATGAGAATGATGATATGGTAATAGACCGTGGTTTTGAACTCGAACAACATCATGTTAATCATGAACAACAACAACCTCAAAAGGGTACGAGGTTGTCGTCCAAAGAAGATGAAGCATCGGTTGAGAAAGTGTTTAAGCACTTATTGGTTCCAACATGGCAGAATCAATTAACTTTAAGAGCTTTTGTGGTTAGCTTTTTTCTGAGCGTGCTTTTCAGTTTCATTGTGATGAAGCTTAATCTCACAACTGGGATTATACCGTCACTGAATATGTCTGCTGGTCTTTTGGGATTCTTCTTTGTGAAAACATGGACAAAGTTTTTGGAAAAATCAGATATGTTGAAACAACCTTTTACAAGACAAGAGAATACTGTTATTCAAACATGTGTTGTTGCTTCCTCTGGAATCGCATTTAGTGGAGGATTTGGGAGTTACCTATTTGGAATGAGTGAACATGTGGCCAAACAATCCTCAGACACTAGTGATTTTAAGAATCCAAAATTGGGATGGATAATTGCTTTTCTTTTTGTTGTTAGCTTTTTGGGACTCTTTTCAGTTGTACCTCTTAGAAAGATTATGGTTATTGACTTCAAATTGACATATCCAAGTGGTACTGCAACTGCTCATCTCATCAACAGCTTCCATACTCCTCAAGGAGCCAAACTAGCAAAGAAGCAAGTGAAATTGTTAGGAAAATTCTTCAGTTTGAGTTTCTTATGGGGTTTCTTTCAATGGTTCTATACAGCTGCCGATGGCTGTGGATTTCAAGCCTTCCCTTCATTAGGGCTCAAAGCATTTGATAACAGGTTTTATTTTGATTTCTCTGCACTTTATATTGGTGTGGGAATGATTTGTCCATATATCATAAATATATCGGTGCTCCTTGGAGGAATTCTTTCTTGGGGAGTAATGTGGCCTCTCATAAAAACCAGAGAGGGTCATTGGTACAAAGTTAACCTCGGTGATGGCAACCTTCAAGGAATCCAAGGTTATAGGATATTTATAGCCATAGCAATGATCCTTGGAGATGGTTTATACAACTTTGTCAAGGTGCTAACTCACACCTTATTAGGTTTGTTTAATCAAATTCGGAACAAACAAAGGGCGGACGCTCTACCTGTCGCAAATCCAGACTCTTCTTCTATTTCTGAGCTATCATACAACGATCAGCGCCGGAAGCAATTCTTCCTTAAAGATCAGATTCCTATATGGTTTGCAGTTGGAGGATATGTTGCTATTGCTTCAATCTCAACAGCCACATTGCCACACATATTCCCTCAACTAAAATGGTATTACATACTTGTCATATACCTAATTGCTCCAACCTTAGCATTTTGCAATGCATATGGTAATGGATTAACTGATTGGTCCCTAGCATCAACCTATGGAAAACTTGCAATCTTCACAATCGGTGCGTGGGCTGGTGCATCACAAGGTGGAGTTCTCGCTAGTCTAGCAGCCTGTGGAGTTATGATGAACATTGTCTCGACAGCTTCTGATCTCATGCAAGATTTCAAAACAGGTTACTTAACCTTGGCTTCTCCGCGTTCTATGTTTGTGAGCCAAATAATCGGCACAGCAATGGGTTGCGTGATCTCTCCTTGTGTGTTTTGGATTTTCTACAAAGCTTTTCCTGATCTAGGAACACCTAAAAGTCGTTACCCCGCGCCAAACGCAATTGTGTTCCGCAACATGGCAATACTCGGAGTCCAAGGATTCGGTTCTTTACCGAATAATTGTCTCTTGCTTTGTTATATATTCTTTGGCGCAGCGATTGTGATAAACTTGATTAAGGATTTGGTTGGTAAAGTAGGGAGGTTCATACCACTTCCAATGGCGATGGCGATACCTTTCTATTTAGGACCTTATTTTGCCATTGACATGTGTGTTGGAAGTTTGATATTGTTTGTTTGGGAAAAGGTTAACAAAGCTAAGGCTGATGCTTTTGCGCCTGCTGTTGCTTCTGGTTTGATATGTGGTGATGGAATATGGACTCTTCTTGCTTCAATGCTTGCTCTTTTTGGAGTTAAGCCACCCATTTGCATGAAGTTCTTGTCAAGGGCTACAAATAGTAGGGTTGATACTTTCTTAGGAAATTAA 2109 0.3978 MAQNENDDMVIDRGFELEQHHVNHEQQQPQKGTRLSSKEDEASVEKVFKHLLVPTWQNQLTLRAFVVSFFLSVLFSFIVMKLNLTTGIIPSLNMSAGLLGFFFVKTWTKFLEKSDMLKQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSEHVAKQSSDTSDFKNPKLGWIIAFLFVVSFLGLFSVVPLRKIMVIDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVKLLGKFFSLSFLWGFFQWFYTAADGCGFQAFPSLGLKAFDNRFYFDFSALYIGVGMICPYIINISVLLGGILSWGVMWPLIKTREGHWYKVNLGDGNLQGIQGYRIFIAIAMILGDGLYNFVKVLTHTLLGLFNQIRNKQRADALPVANPDSSSISELSYNDQRRKQFFLKDQIPIWFAVGGYVAIASISTATLPHIFPQLKWYYILVIYLIAPTLAFCNAYGNGLTDWSLASTYGKLAIFTIGAWAGASQGGVLASLAACGVMMNIVSTASDLMQDFKTGYLTLASPRSMFVSQIIGTAMGCVISPCVFWIFYKAFPDLGTPKSRYPAPNAIVFRNMAILGVQGFGSLPNNCLLLCYIFFGAAIVINLIKDLVGKVGRFIPLPMAMAIPFYLGPYFAIDMCVGSLILFVWEKVNKAKADAFAPAVASGLICGDGIWTLLASMLALFGVKPPICMKFLSRATNSRVDTFLGN 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03684 702 NCBIfam OPT family oligopeptide transporter 57 674 IPR004813 GO:0035673
Vifa1g03684 702 Pfam OPT oligopeptide transporter protein 59 674 IPR004813 GO:0035673
Vifa1g03684 702 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 38 689 IPR045035 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03684 Vifa-Chr1 569430000 569458640 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03684 16 595 Organic Solute Cotransporters AT1G09930 21.851 8.69e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03684 - - tpra:123907989 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03684 1 569430000 569458640 Vifa1g03684 1 569430000 569458640 ECH