Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03641 ATGGGATTAGGATCTTCTGATTCTTCTTCAAATGATGACAACATCAACAGCAACAACAACCTCAACAACCCTTTGTTACTTTCTGAATCTCATTCCCCCAAAAGAACAGGGACTCTTTGGACAGCAGTTGCACACATAGTGACAGGTGTGATAGGATCAGGAGTGTTGTCTCTTCCATGGAGTATTGCACAACTTGGTTGGATTGTGGGACCATTCTCTATTCTTCTTGTTGCTTCTTCAACTCTCTTCTCTGCTTTTCTTTTGTGTAATACTTATCGTTCTCCTAATCCTGAATATGGTCCTCATAGAAGTGCTTCTTATCTTGATGTTGTCAATTTTAACTTAGGAGTTGGTAATGGAAGATTGTGTGGCATTCTTGTGAATATATGTATTTATGGTTTTGGAATTGCCTTTGTCATTACAGCATCTATCAGCTTAAGAGCAATCCAAAACTCATTTTCTCATCCCGACAAAGAGAATGAAGCAACAAGTGAACTTGCAGATGCATTTTATATGTTGCTTTTTGGGATTCTCCAAATTGTTCTCTCACAAATACCAAACTTACATGACCTCAATTGGCTCTCAATTGTCGCTGCCATTACGTCCTTTGCTTATTGTTTCATAGGAATGGGACTTGCCATCATGCAAATCATGGAAAATGGATATGCTAAGGGTAGTATTGAAGGAATCAGTACCTCTACTAGAACTCAGAAGTTGTGGTTGATTTCCCAAGCGCTTGGTGACGTGTCATTCTCGTATCCTTTCTCGACTATTATGATGGAAATACAAGATACTTTGAAGACGCCTCCGCCAGAAAACCAAACCATGAAAAAGGCGTCAACCATATCAGTCGCTATCACAACATTCTTTTACCTCTGTTGTGGATGTGCCGGATATGCTGCATTTGGCGATAATACACCGGGAAACCTTTTAACCGGATTCGGAACCTCAAGGTTTCAATGGCTTGTGAACTTTACTAATGCTTGTATTGTGATTCACCTAGTTGGTTCATATCAGGTATACTGTCAGCCACTGTTTGGCAACGCCGAGAGTTGGTTACGTTTTAGATTCACCGAGAGTGAATTTGTGAATCGCACATATACCTTGAAACTCCCATTGCTGCCAGCTTTTGAACTAAGTTTTCTCAGCTTATCATTCAGAACTGCTTATGTTGCATCGACCGTGCTGATTGCAGTGATCTTTCCTTACTTCAACCAGATTCTCGGACTTTTAGGCAGCATAAGCTTTTGGCCATTGACCATATATTTTCCAGTGGAAATATACTTGAGTAGGTCGAATACCGATTCATGGACTGCTAAGTGGATTATGCTTCAAACTTTCAACATTTTTGGACTTGTATTTGGATTGTTCACCATGGTTGGTTGCCTTAGAGGATTAATTGCCGAAAGATTAGGCTAA 1419 0.401 MGLGSSDSSSNDDNINSNNNLNNPLLLSESHSPKRTGTLWTAVAHIVTGVIGSGVLSLPWSIAQLGWIVGPFSILLVASSTLFSAFLLCNTYRSPNPEYGPHRSASYLDVVNFNLGVGNGRLCGILVNICIYGFGIAFVITASISLRAIQNSFSHPDKENEATSELADAFYMLLFGILQIVLSQIPNLHDLNWLSIVAAITSFAYCFIGMGLAIMQIMENGYAKGSIEGISTSTRTQKLWLISQALGDVSFSYPFSTIMMEIQDTLKTPPPENQTMKKASTISVAITTFFYLCCGCAGYAAFGDNTPGNLLTGFGTSRFQWLVNFTNACIVIHLVGSYQVYCQPLFGNAESWLRFRFTESEFVNRTYTLKLPLLPAFELSFLSLSFRTAYVASTVLIAVIFPYFNQILGLLGSISFWPLTIYFPVEIYLSRSNTDSWTAKWIMLQTFNIFGLVFGLFTMVGCLRGLIAERLG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03641 472 Pfam Transmembrane amino acid transporter protein 35 467 IPR013057 -
Vifa1g03641 472 PANTHER OS05G0424000 PROTEIN-RELATED 35 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03641 Vifa-Chr1 561375184 561378864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03641 27 469 Organic Solute Cotransporters AT1G44100 45.475 2.20e-142 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03641 K24917 - gmx:100809376 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03641 1 561375184 561378864 Vifa1g03641 1 561375184 561378864 ECH