Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03542 ATGATGGGTATTACCAGAGACAGAGACGAAACCCTCACATTCACAATCCCTTCATCTTCCTCTCATTCTTCTCCCATCACTGTTTCCGACACACTTGACAGTTACCTAGTCGACCCAAGAAGTGCTTCTGGAAGTTTCCAGAACGAGGGTCTTCTTTCCGGCGGAGATGTAGCCGATGCTGAGTTCGGTTTCTCGAGACCTGATTTCCGACAGAGTTCGCTTGTTGGTACTGTTGAGTTGTACGAACGACACGTGTTTCTTTGTTATAAGAATCCGAGGTTTTGGCCACCCAGGATTGAGGCTGCTGAGTTTGATCGGTTGCCTAGGTTGCTTTATGCTGCTGTTAAGGCGAGGAAGAATCATATGAAGAAGGAGACCCGGTTGACGATATGCGAGGGTCACGATGGGACTGAAACATCTAATGGAGATGTGTTAATTTTTCCTGAGATGATCAGATACAGGAGATTGACACATTTTGATGTTGAAACTTTTGTTGAAGAAGTTCTAGTGAAGGATGGAGAGTGGCTACCAGGAACACCTGAAATGTTGAAAGGTTCGTATGTTTTTGTGTGTTCACATGGATCGCGTGATCGCAGATGTGGAGTTTGTGGACCGGTTTTGATAAGTCGATTTAGGGAAGAGATAGAGTTACATGGTCTACAAGGTAAAGTATTTGTTAGTCCGTGCTCCCACGTTGGAGGACATAAGTATGCAGGAAATGTCATTGTATTTGGATCAAACGTTAATGGAGAAGTCACTGGTCACTGGTATGGATATGTTGCCCCGGAGGATGTACCTTTATTGCTTCAACAACATATCATGAAAGGGGAGATTATAGACTCATTATGGAGGGGTCAGATGGGTTTATCAGAAGATGAGCAAATAACAAAGCAAGAACAAAGGCTTCTGCTGAATGGCATAGGAAAACTAGAAGAAACCTCTGCACAGAATGGATCTCGAGACGATTTTGCAAGCTGCTGCCAATCAAATGGTGTAAGTTGCTGCCAATCAAATAGTGTAAGCTGCTGCCAAGAAAACGGAGACTCTTCCTTTTGCCAGAGTCAGGTGTCAGTGGATAACAAAATGATCCCCGACATCATCGAGACTGAGGCAAATCTTTCAGCTGATAATAATAATAAGAGCAACGGGGCAGTGATTTCTCGGATCAACAGCGGGAAAGGATCTTCACGCAAGTTTCATACTATGACAGCTTGGCTCGACGGCTGGGAGCAAGAAGATACTTACGCTGCTCTCGCTGTTGTATGTGCCGCAGCATCGGTCGCCATTGCCTATAACTGCTACAAGCAGCTGACATAA 1317 0.4487 MMGITRDRDETLTFTIPSSSSHSSPITVSDTLDSYLVDPRSASGSFQNEGLLSGGDVADAEFGFSRPDFRQSSLVGTVELYERHVFLCYKNPRFWPPRIEAAEFDRLPRLLYAAVKARKNHMKKETRLTICEGHDGTETSNGDVLIFPEMIRYRRLTHFDVETFVEEVLVKDGEWLPGTPEMLKGSYVFVCSHGSRDRRCGVCGPVLISRFREEIELHGLQGKVFVSPCSHVGGHKYAGNVIVFGSNVNGEVTGHWYGYVAPEDVPLLLQQHIMKGEIIDSLWRGQMGLSEDEQITKQEQRLLLNGIGKLEETSAQNGSRDDFASCCQSNGVSCCQSNSVSCCQENGDSSFCQSQVSVDNKMIPDIIETEANLSADNNNKSNGAVISRINSGKGSSRKFHTMTAWLDGWEQEDTYAALAVVCAAASVAIAYNCYKQLT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03542 438 FunFam APD1p protein 185 284 - -
Vifa1g03542 438 SUPERFAMILY Thioredoxin-like 187 289 IPR036249 -
Vifa1g03542 438 Coils Coil 434 438 - -
Vifa1g03542 438 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 56 425 IPR009737 -
Vifa1g03542 438 Gene3D Glutaredoxin 81 176 - -
Vifa1g03542 438 Gene3D Glutaredoxin 185 285 - -
Vifa1g03542 438 Pfam Sucrase/ferredoxin-like 74 285 IPR009737 -
Vifa1g03542 438 CDD TRX_Fd_Sucrase 185 287 IPR009737 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03542 Vifa-Chr1 549393438 549397053 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03542 - - gmx:100816329 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03542 1 549393438 549397053 Vifa1g03542 1 549393438 549397053 ECH
Vifa1g03542 1 549393438 549397053 Vifa1g03542 1 549393438 549397053 PCT