Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03538 ATGGTAGCTAGAATCAGGAAAAGTGTTACTGAGTCTCATAATTCAACAAAACCTGTTGTTGGAGAGGTTGATACTAATCCCCCGATTCAATCGGTTAAAGATGCTGTTTATCTATTTGATGAAGGTGCATTCTCTGGCGAAAATCCTATTGTTAAGAAGTCAAAATCTAAATCTTATTCTGTTGTCGAGGGTGTTTGGGCAAAGGAGACAAAACTTCACTTAGCACAGAAAGAGCTGAACAAAATAAAGGTGCAACTAAAAAACGCGGAAACTACCAAGGCTGAAGTTCTAGAGGAGCTTGAAAAGGCCAAAACAACTGTTGTGGATCTGAAACAAAAGATTGAAGTTCTCACTGAATCGCGAGGAATAGCAATTCAGGCAACAGAAGCTGCAAAGAGTCAAGCGAAGCAGATTAAAGAAGAAAAAAGTGGGAATCTTAACGTTATCAATGGTACTTCGAAAGAAGTGTTGGAAACTGTGGTTCAGAGGTATAAATCTATTATTATAGAACTTGATGAGGCAAAGCAAGAACTGAGGAAAATTCGTCAGGAGTGTTTGGAATCGGTGGAAGCAAGAGTTTCTGCTTTCAAGAAAGCTGAAGAAGCTAGAGATGCAATAGAGACAAATGAAGAACGGGCGCATGAGCTTTTCAATGAAATTTTAGCGGTACAAGAATCAATTCAACAAATGAAGGTTGCATCTGTCGAAGCCGATCAACAGAAAAAAGAGATATTAGTTGAGAAAAATGTTCTGAGCCAATCTTATATATCCAGCCTTGAAGAATATGAAAAGAACTTGCTTGCTTTAAACAAGGATTTTAGTTTGAAACTCACCAAAAATCTTGAAGTGAAGCTTACGAATAGATTTAGTGAAATATCAGCTCTTCAAAAGGAGATTGAAAATAAAAAGACTTCAGATTTTGAATCAATGAAAACTCTCACCTCGGTGCTTAATGGTGCTAAGGAATCACTGCAGAAATTATCAGAAGAAGAAGACTCTGTTAGATGCTATGTGGAATCTCTTAAGTTGGATTTAGAGAATGTTAAAAGAGAGCACTTGGAATTGAAAGAGAAAGAATGCAAAACTGAATCCGTTCTTAGGAATCTGCGTGATGAGCTCGAGAAACGTGAGTTTGAGCTTGAAATCTACTTGGCAGAAGAATCTGAAGTTAGAGTTTCATCTGAGAGAATGATCTCAATGTTGAATCAATTGTCTGATGAAACTGAAAAGGCGCGGCGTGAAGCAGAAGATATGAAGGTTTATGCAGTTGAATTGAAGGTAGAAGCTGAAGTCACCAAACGCGCGCTTGAAGATGCAGAAACCAAGCTCAAAGTAGCATTAGAAGAAGCAGAAGCGGCGAAAGCAGCAGAGGCAATTATTCTTGATCAGATTAAAGACTTATCTGAGAAGGCTAATGCTGCTCGCAACTCCGTATCTGAATCTGGTGCTAGAATAACAATCTCAAAGGAGGAATTTGATTCCTTAAACCGCATGGTCGAGGAGTTTGATAAACTAGCGAGCAGCAAAGAGGCTTCTGCGACAGCGCTCATCGAAGCTGCAAAGGCTAGTGAAATCGAAACTCTCCAAAAGTTAGAGGAAACTCAGAAGGAGATTGAGAATATAAAGAAAATGACTCAGGAGGTGTTGAAAAAGACCGAGATGGCTGAAGCTGCAAAGAATGCAGTGGAGAGTGAGCTTATAAGGTGGCGCCAGAGAGATCATGAGAAGGCAGCAGAAACTGCAGCTCGAATATTGGCTGTAACACCAATCTCGTCTCGTCGGAGAAGCAGATTTCGAAAGCAAAATTCAACTCCAAGAAGTATGGAGGTTAGGAAGTTGGAAAGGAAGGGTTCATTTTCAAAGAAAACTCTGTTCCCAAGTATTAGTAGAATCTTTAGCAGGAAAAAAAGCATGAAGTTTGAGAGAGGAGTTCCTTCTTACCTTCCAGGTGAGAGTCCTTTGTGA 1965 0.3964 MVARIRKSVTESHNSTKPVVGEVDTNPPIQSVKDAVYLFDEGAFSGENPIVKKSKSKSYSVVEGVWAKETKLHLAQKELNKIKVQLKNAETTKAEVLEELEKAKTTVVDLKQKIEVLTESRGIAIQATEAAKSQAKQIKEEKSGNLNVINGTSKEVLETVVQRYKSIIIELDEAKQELRKIRQECLESVEARVSAFKKAEEARDAIETNEERAHELFNEILAVQESIQQMKVASVEADQQKKEILVEKNVLSQSYISSLEEYEKNLLALNKDFSLKLTKNLEVKLTNRFSEISALQKEIENKKTSDFESMKTLTSVLNGAKESLQKLSEEEDSVRCYVESLKLDLENVKREHLELKEKECKTESVLRNLRDELEKREFELEIYLAEESEVRVSSERMISMLNQLSDETEKARREAEDMKVYAVELKVEAEVTKRALEDAETKLKVALEEAEAAKAAEAIILDQIKDLSEKANAARNSVSESGARITISKEEFDSLNRMVEEFDKLASSKEASATALIEAAKASEIETLQKLEETQKEIENIKKMTQEVLKKTEMAEAAKNAVESELIRWRQRDHEKAAETAARILAVTPISSRRRSRFRKQNSTPRSMEVRKLERKGSFSKKTLFPSISRIFSRKKSMKFERGVPSYLPGESPL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03538 654 Coils Coil 310 330 - -
Vifa1g03538 654 Coils Coil 338 358 - -
Vifa1g03538 654 Coils Coil 72 120 - -
Vifa1g03538 654 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 21 626 - -
Vifa1g03538 654 MobiDBLite consensus disorder prediction 593 615 - -
Vifa1g03538 654 Coils Coil 157 191 - -
Vifa1g03538 654 Coils Coil 394 456 - -
Vifa1g03538 654 Pfam Weak chloroplast movement under blue light 22 574 IPR008545 -
Vifa1g03538 654 Coils Coil 517 561 - -
Vifa1g03538 654 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g03538 654 Coils Coil 199 219 - -
Vifa1g03538 654 Coils Coil 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03538 Vifa-Chr1 549164018 549166663 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03538 - - psat:127117570 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03538 1 549164018 549166663 Vifa1g03538 1 549164018 549166663 ECH
Vifa1g03538 1 549164018 549166663 Vifa1g03538 1 549164018 549166663 PCT