Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03534 ATGGCGAAAATGGTATACATGGCTTTACCTTTCCTCGCACAACCACACAAAACCTCCAAAGCTTCTTCTTCATCACCGTCTTCTTCAAAACCATCGAAGCTTCAACATAGAACCCGCAGCACCAACATATCCGTTCCATCATCTACCAACGTTGCTGCTAACCGTTCTCTTAAACCCCAGAAGCTTAATTCAGATGTTTCTCCTCACAGAGCTGTGTCTGCGGTGAGATTGATGAGAATTGAACTTGGTGGTGCTTTTGCTGGCCTTCTTAATGAGAAAGGGAAAGGTTCTGGTGAAAATGAGATGGGTTATGTTCAAAGAACGCTTGGCTTTCGTACTCGAGAATTGAATAATCAAGACCTTAGATTGGTTACAGAAATTGTTGGGGGTACAATTCGTTGGAGGAGATACCTTGATCATTTAATCAGTTCATTGTGCCACGATAAAGATATATCTAGTATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGATTCTCAAATTAGATATGCCACCTTATGCTGTTGTAGATGAGAATGTGCAGCTTGCCAAAGCTGCTCTCAGGCCTGGTGCAGGCAACTTGGTCAACGGAATCCTCCGAACGCTAGTTCTGCTCAAGGAAAATGAAACTCTTCCTTTGCCCAAAGTAGAGGGTGATGATCGTTCTCAAGCACGTGCTCTGGCAACTCTCTACTCACATCCAGTTTGGATAGTAAGGAGATGGACAAAGTATCTTGGTCAGGAAGAAACCATTAAATTGATGATATGGAATAACAGTGAACCGAGTTATAGTTTAAGAGCAAATCGGGCAATAGGTTTTTCAAGAGACGACCTTGTGGCACAGCTTAATGCGTTGAAGGTTCCACACAAGCTTTCATTGCATTTGGATGATTTTGTTCGCATCAAAACTGGGTTGCAGACCATCATTCATGCTGGCCTACTCAAAGAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTTATAGTTTCTATTGTGGATCCTCAACCCGGTGAAACCATTGTTGATTGTTGCGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGACAGGGCATGGTATACGCAATTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCATCAAGTAGATGGTGTCGTTACCACCATCCATGCCGATCTTCGTACATTAACTGACGGTGAACCACTTAAGAGTAACAAAGTTTTGTTGGACGCGCCATGCTCAGGGCTTGGCGTTCTTTCAAAGAGAGCGGACTTACGTTGGAACAGAAATCTGGAAGATATGGAAGAATTGAAGAAATTACAGGATGAACTCCTCGATGCAGCATCCACATTGGTAAAACCCGGGGGAGTATTAGTTTACAGTACATGCTCCATAGACCCTGAAGAGAATGATGAGAGGGTAGCTGCATTTCTATTAAGACATCATGATTTTCACATTGATCCTGTAGACAGATATGTTCCACCTGATTTTGTGACGCCAAATGGTTTCTATTTCTCCAACCCAGTGAAACATTCACTCGATGGCTCCTTTGCTGCTCGTTTGGTACGCGCGTTGTAA 1605 0.4324 MAKMVYMALPFLAQPHKTSKASSSSPSSSKPSKLQHRTRSTNISVPSSTNVAANRSLKPQKLNSDVSPHRAVSAVRLMRIELGGAFAGLLNEKGKGSGENEMGYVQRTLGFRTRELNNQDLRLVTEIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEILKLDMPPYAVVDENVQLAKAALRPGAGNLVNGILRTLVLLKENETLPLPKVEGDDRSQARALATLYSHPVWIVRRWTKYLGQEETIKLMIWNNSEPSYSLRANRAIGFSRDDLVAQLNALKVPHKLSLHLDDFVRIKTGLQTIIHAGLLKEGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMVYAIDVNSGRLRILKETAKLHQVDGVVTTIHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRNLEDMEELKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDERVAAFLLRHHDFHIDPVDRYVPPDFVTPNGFYFSNPVKHSLDGSFAARLVRAL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03534 534 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 111 532 IPR004573 GO:0006364|GO:0008649
Vifa1g03534 534 FunFam Ribosomal RNA small subunit methyltransferase B 67 216 - -
Vifa1g03534 534 Pfam NusB family 102 206 IPR006027 GO:0003723|GO:0006355
Vifa1g03534 534 Gene3D Vaccinia Virus protein VP39 332 533 IPR029063 -
Vifa1g03534 534 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 224 328 - -
Vifa1g03534 534 Pfam 16S rRNA methyltransferase RsmB/F 336 530 IPR001678 GO:0008168
Vifa1g03534 534 PRINTS Viridiplantae FMU-related RCMT signature 214 227 IPR023268 -
Vifa1g03534 534 PRINTS Viridiplantae FMU-related RCMT signature 491 503 IPR023268 -
Vifa1g03534 534 PRINTS Viridiplantae FMU-related RCMT signature 75 98 IPR023268 -
Vifa1g03534 534 PRINTS Viridiplantae FMU-related RCMT signature 99 115 IPR023268 -
Vifa1g03534 534 PRINTS RNA (C5-cytosine) methyltransferase signature 346 356 IPR023267 GO:0001510
Vifa1g03534 534 PRINTS RNA (C5-cytosine) methyltransferase signature 414 426 IPR023267 GO:0001510
Vifa1g03534 534 PRINTS RNA (C5-cytosine) methyltransferase signature 464 480 IPR023267 GO:0001510
Vifa1g03534 534 PRINTS RNA (C5-cytosine) methyltransferase signature 317 331 IPR023267 GO:0001510
Vifa1g03534 534 PRINTS RNA (C5-cytosine) methyltransferase signature 515 532 IPR023267 GO:0001510
Vifa1g03534 534 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 202 532 IPR023267 GO:0001510
Vifa1g03534 534 Gene3D - 97 219 IPR035926 -
Vifa1g03534 534 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 257 533 IPR001678 GO:0008168
Vifa1g03534 534 MobiDBLite consensus disorder prediction 16 65 - -
Vifa1g03534 534 SUPERFAMILY NusB-like 106 241 IPR035926 -
Vifa1g03534 534 CDD AdoMet_MTases 344 470 - -
Vifa1g03534 534 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 228 532 IPR029063 -
Vifa1g03534 534 FunFam Ribosomal RNA small subunit methyltransferase B 329 533 - -
Vifa1g03534 534 Gene3D Sun protein; domain 3 224 330 - -
Vifa1g03534 534 MobiDBLite consensus disorder prediction 15 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03534 Vifa-Chr1 548541352 548545836 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03534 K03500 - gmx:100779327 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03534 1 548541352 548545836 Vifa1g03534 1 548541352 548545836 ECH