Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03514 ATGGCGCCTGTGGCAGCGAGAAGCGCCGGCGCCGTTGGTGCCGGAACCGCCATCTTACTCTCTCTCGCCGTCGCGTATTTCTTCTGCAATTCATCAAAAAACAACAAGAAGAAGAAATCAAAGAATGGAATCCTTTCCGCCATCGGTAACACTCCTCTGATTCGAATCAATAGTCTCTCCGATGCCACTGGTTGCGAAATTCTTGGCAAGTGTGAGTTTTTGAACCCTGGAGGGAGTGTCAAAGATCGCGTTGCAGTTCAAATTATTGAAGAGGCTTTAGAATCTGGGCAGCTACGTAAAGGTGGTATAGTTACTGAAGGGAGTGTCGGAAGCACTGCCATTAGCTTTGCTACTGTTGCTCCTGCTTATGGATGCAAATGCCATGTGGTTATTCCAGATGATGCTGCCATTGAGAAGTCTCAAATAATTGAAGCTCTTGGGGCAAATGTTGAAAGAGTACGGCCAGTGTCAATCACTCACAAAGACCATTTTGTCAATATTGCAAGAAGACGGGCAACTGAAGCAAACGAGTTTGCATTTAAGCATAGAAAATCACAACCGAATGGCACGGACTCGCAGCAAATAAATGGTTATATATCTGACGGACACGACCACAACTCACTCTTTCCTGATGATTGTCAAGGCGGCTTCTTTGCTGATCAGTTTGAGAACCTTGCAAACTTCAGGGCCCATTACCATGGTACAGGACCTGAGATCTGGGAACAGACAAATGGAAAGTTAGATGCATTTGTTGCAGGAGCAGGAACTGGTGGTACTGTGGCTGGTGTTTCCAAGTTTCTTCAGGAAAAGAATCCAAACATCAAGTGTTACCTCATAGATCCACCTGGTTCTGGCTTGTTTAATAAGGTAACGAGGGGGGTAATGTACACTAAAGAGGAGGCAGAAGGACGGAGACTTAAGAATCCATTTGACACTATAACAGAAGGAATTGGAATTAACAGGCTAACAAAGAATTTTGCAGAGGCAAAACTTGATGGGGCCTTTAGAGCCACAGATATGGAGGCTGTTGAAATGGCCCGGTTTCTTGTGAAGAATGACGGGCTTTTTCTTGGGAGCTCTTCTTCATTGAACTGTATTGGAGCAGTTAGAGCAGCTCAATCATTAGGCCCTGGTCACACAATTGTAACCATTCTGTGCGACAGTGGAATGAGACATTTGAGCAAGTTTTGTAATGATCAATACTTGTCTAAGCTTGGTTTAACACCTAAAGCAACTGGATTAGAGTTCTTGGGTATCAAATGA 1263 0.445 MAPVAARSAGAVGAGTAILLSLAVAYFFCNSSKNNKKKKSKNGILSAIGNTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVQIIEEALESGQLRKGGIVTEGSVGSTAISFATVAPAYGCKCHVVIPDDAAIEKSQIIEALGANVERVRPVSITHKDHFVNIARRRATEANEFAFKHRKSQPNGTDSQQINGYISDGHDHNSLFPDDCQGGFFADQFENLANFRAHYHGTGPEIWEQTNGKLDAFVAGAGTGGTVAGVSKFLQEKNPNIKCYLIDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTKNFAEAKLDGAFRATDMEAVEMARFLVKNDGLFLGSSSSLNCIGAVRAAQSLGPGHTIVTILCDSGMRHLSKFCNDQYLSKLGLTPKATGLEFLGIK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03514 420 PANTHER CYSTATHIONINE BETA-SYNTHASE 43 402 - -
Vifa1g03514 420 Pfam Pyridoxal-phosphate dependent enzyme 46 387 IPR001926 -
Vifa1g03514 420 CDD CBS_like 49 394 - -
Vifa1g03514 420 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 41 405 IPR036052 -
Vifa1g03514 420 Gene3D - 48 393 IPR036052 -
Vifa1g03514 420 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 70 88 IPR001216 GO:0006535
Vifa1g03514 420 FunFam Cysteine synthase 229 393 - -
Vifa1g03514 420 Gene3D - 78 228 IPR036052 -
Vifa1g03514 420 FunFam Cysteine synthase, putative 48 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03514 Vifa-Chr1 545716520 545722660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03514 48 394 Miscellaneous Gene Families AT3G04940 29.513 3.95e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03514 K01738 - gmx:100799081 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03514 1 545716520 545722660 Vifa1g03514 1 545716520 545722660 ECH