Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03492 ATGATGAGAGGAAGATTCCTCAATTTCTTTCTCAATCCAACACCAAAAAAATGGTCTCTTCTTTCTCTTACTCACCACAAATCTCAACCTCACCAAGTAATCTCTGTTGAAGCAAATTCAAAGAATCTTTCACCTCATCATGATGGACAAAAAATCTTCACACCAAGTTTCAACTTCAAATATGGAATCAACACCTTGCATACTAGTTCAGTTGTGGAACAATCTGAAAAAGAAGAGGTTGAAGATTGCATGTGGAAGAAGATGAAAGAAGAAGCTAAAGTTGATGTCACTGTTGAACCTATTTTGTCGGGTTACTATCATGTTTCAATTCTGTCTCATAAATCGTTGGAAAGTGCTTTGGCTAATCACTTAGCTGTTAAATTAAGCAGTGTAAGTCTTCCTAGTACAACTCTTTCTGATTTATTTGTCGGGGTTTTGGAATCTGATAAAGAAATTATGGATGCTGTTAAGAATGATATGAAAGCAGTTAAGGAAAGAGATCCTGCTTGTATAACTCATGTCCATTGTTTCTTGAATTTCAAAGGCTTTTTAGCATGTCAAGCTCATAGAATAGCTCATAATTTATGGTCAAATGGAAGGAAGGTTTTGGCTGTTATAATTCAGAATCGAGTTTGTGAAGTTTTCGGAGTTGATATTCATCCGGGAGCTAAGTTCGGGAGTGGAATATTGTTTGATCACGCGACGGGGATTGTGGTGGGAGAAACAGCTGTGATTGGAAATGATGTGTCAATTTTGCATAGCGTGACGTTGGGAGGAACCGGTAAGGCTCATGGCGATAGGCATCCGAAGATTGGTGATGGAGTGTTGATTGGTGCTGGAACTTGTATTTTGGGGAACATTAAAGTTGGTGAAGGTGCAAAAATTGGGGCTGGTTCTGTTGTGATTAAGGATGTGCCTCCGAGGACTACTGTCGTTGGGAATCCGGCGAAATTGGTTGGAGGGAAGAACAATCCTATTAAACTTGATAAGATTCCTAGCCATACTATGGATCATGTTTCAAATATTGCTGAGTTTTATGATTATGTTGTTTAG 1053 0.3865 MMRGRFLNFFLNPTPKKWSLLSLTHHKSQPHQVISVEANSKNLSPHHDGQKIFTPSFNFKYGINTLHTSSVVEQSEKEEVEDCMWKKMKEEAKVDVTVEPILSGYYHVSILSHKSLESALANHLAVKLSSVSLPSTTLSDLFVGVLESDKEIMDAVKNDMKAVKERDPACITHVHCFLNFKGFLACQAHRIAHNLWSNGRKVLAVIIQNRVCEVFGVDIHPGAKFGSGILFDHATGIVVGETAVIGNDVSILHSVTLGGTGKAHGDRHPKIGDGVLIGAGTCILGNIKVGEGAKIGAGSVVIKDVPPRTTVVGNPAKLVGGKNNPIKLDKIPSHTMDHVSNIAEFYDYVV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03492 350 Gene3D serine acetyltransferase, domain 1 66 217 IPR042122 -
Vifa1g03492 350 SMART SATase_N_2_a 84 188 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vifa1g03492 350 FunFam Serine acetyltransferase 218 344 - -
Vifa1g03492 350 SUPERFAMILY Trimeric LpxA-like enzymes 82 319 IPR011004 -
Vifa1g03492 350 NCBIfam serine O-acetyltransferase 156 317 IPR005881 GO:0005737|GO:0006535|GO:0009001
Vifa1g03492 350 Gene3D Hexapeptide repeat proteins 218 340 - -
Vifa1g03492 350 CDD LbH_SAT 215 315 IPR045304 -
Vifa1g03492 350 PANTHER SERINE ACETYLTRANSFERASE 73 349 - -
Vifa1g03492 350 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 277 305 IPR018357 GO:0016740
Vifa1g03492 350 Coils Coil 146 166 - -
Vifa1g03492 350 Pfam Serine acetyltransferase, N-terminal 84 188 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vifa1g03492 350 Pfam Bacterial transferase hexapeptide (six repeats) 268 302 IPR001451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03492 Vifa-Chr1 543413491 543414543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03492 82 350 Miscellaneous Gene Families AT2G17640 51.301 3.45e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03492 K00640 - gmx:100820316 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03492 1 543413491 543414543 Vifa1g03492 1 543413491 543414543 ECH
Vifa1g03492 1 543413491 543414543 Vifa1g03492 1 543413491 543414543 PCT