Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03465 ATGGATATTTTAGATTGCGCAAGAATTATATTAGACAGAGTTTTGAAATTTGATCCCGAGAATGCTCGAAAGGTAGTGGGTTATCTCCTTATGCAAAATCTCAGTGAACCAGAAATGGCTAGATTGGCATCTTGCCCGGACCAGATTATGGCCGAAGTTGTACTTAAAGCCAAAATTCAAATGTTGGCTGTAACTTCAGCCATGACTTCGCCGCCACTGAATGTAGCTCCTCCCCGAGGTTTAGCCTATTTTCCAGGTTTCTCTCCATCTTCACCACCACCAACACCAACACCACGGAACTTTCAGGGTCCGTCTACCTATTGGGATCTACAGTCTTCGGCTAGCAATGAAAATCAAGAATTTATGGGAGTGAGTTATCTGGATTCGGTCACGGAGCTTCAGAAACAAGCACAGATGTTGAGCTTGGAGAATCATTTAGATCATGTGAATACCAGACCTAGAGGTGTTTTCGTCAATGATTACAACAATGGTTTTGATTCTTCTGTTGTCAATTTCGGTGGAAGATCTGCGAAAAGGTTTTCGAATTCGAACCCGTCTGAATTTCCAGTCAAGATCTGTCATTATTTCAGTAAAGGATACTGTCGGCATGGAGGTAATTGTCGATATTTTCATGGTCAAGTTCCTCATGAGAGTTTATCTTCTCAAATACATATGCATGGAAATGGTGATAACGAGGATCAGGTGATTTCACCGCGCTCGTTAGCTCAGATAGAGTCTGAAATTATTGAGCTTCTTAAGCAGAAAAGAGGTAATCCAATGTCAATTGCTTCGCTGCCGATGGCATACTTTGAGAGATACAAAAAGGCATTGCAAGCTCAGGGCTATTTAACTGAGAGTCAGCGACATGGTAAGTCTGGTTATAGTTTGACAAGGCTTCTTGCGCGGCTGAATGGTATTCGGCTAATCGACAGGCCTCATGGACAGCATGCGGTTATTTTGGCGGAAGATGCCCCGAAATACATTCAAACCAGAGATTTAGTTCAAAATATCAGTGCTTCTCGACAAATATATATGACTTTTCCAGCTGACAGCACTTTCTCCGAAGATGATGTCGCGAGCTATTTCAACGAAATTGGACCTGTTGATGATGTTAGGATTCCATGTCAACACAAAAGAATGTTTGGGTTTGTAACATTTGCTCATCCCGAAACCGTTAGAATCATCTTGGAAAAGGGAAATCCCCATTTTGTCCGCGGCTCTCGGGTGCTTGTGAAACCTTACAGAGAGAACACAAGAAGATATCAAGATAGAGTGGAGCACTTTCCTTGTTGTCCACGTTACTATACAAATATGGATTCTGAATTTGACTTGATTCAAAGAGAACTCGGTCCAAGAGAACTCGGAAAACATAGGTCGATGATGAGGAGGCAGCGTATGGAAGAGGCGCAAGCTTTTGAACATGACAAGAGAAGTCTTGAGCAGCTGCAGCTTTCTCAAAGAGTTTTGCCCGTTTCAGGTTTTTCTGCGGACGGGTTTAGAGTTCCAGATGATCGATTCAATTTCCAGCCTGTAGAAGTTCTGAACTATACCTCGAATGACGTATCCAAGGTTGCAGAAACCAATTCCTCTGAAGGAAGCAACGAAGTACACGTGCCCCATCCCCCGAAAGTACCCCATTTCCCGGACGAGTTTCCGATTGAAAATAATAATTAA 1674 0.4283 MDILDCARIILDRVLKFDPENARKVVGYLLMQNLSEPEMARLASCPDQIMAEVVLKAKIQMLAVTSAMTSPPLNVAPPRGLAYFPGFSPSSPPPTPTPRNFQGPSTYWDLQSSASNENQEFMGVSYLDSVTELQKQAQMLSLENHLDHVNTRPRGVFVNDYNNGFDSSVVNFGGRSAKRFSNSNPSEFPVKICHYFSKGYCRHGGNCRYFHGQVPHESLSSQIHMHGNGDNEDQVISPRSLAQIESEIIELLKQKRGNPMSIASLPMAYFERYKKALQAQGYLTESQRHGKSGYSLTRLLARLNGIRLIDRPHGQHAVILAEDAPKYIQTRDLVQNISASRQIYMTFPADSTFSEDDVASYFNEIGPVDDVRIPCQHKRMFGFVTFAHPETVRIILEKGNPHFVRGSRVLVKPYRENTRRYQDRVEHFPCCPRYYTNMDSEFDLIQRELGPRELGKHRSMMRRQRMEEAQAFEHDKRSLEQLQLSQRVLPVSGFSADGFRVPDDRFNFQPVEVLNYTSNDVSKVAETNSSEGSNEVHVPHPPKVPHFPDEFPIENNN 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03465 557 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 348 419 - -
Vifa1g03465 557 SMART rrm1_1 342 412 IPR000504 GO:0003723
Vifa1g03465 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 416 IPR000504 GO:0003723
Vifa1g03465 557 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 526 - -
Vifa1g03465 557 SUPERFAMILY CCCH zinc finger 189 212 IPR036855 GO:0046872
Vifa1g03465 557 Gene3D - 324 427 IPR012677 -
Vifa1g03465 557 Pfam OST-HTH/LOTUS domain 240 317 IPR025605 -
Vifa1g03465 557 ProSiteProfiles OST-type HTH domain profile. 240 323 IPR025605 -
Vifa1g03465 557 SUPERFAMILY RNA-binding domain, RBD 352 422 IPR035979 GO:0003676
Vifa1g03465 557 Gene3D - 157 222 - -
Vifa1g03465 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 408 IPR000504 GO:0003723
Vifa1g03465 557 ProSiteProfiles Zinc finger C3H1-type profile. 187 214 IPR000571 GO:0046872
Vifa1g03465 557 MobiDBLite consensus disorder prediction 524 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03465 Vifa-Chr1 539273415 539275663 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03465 - - gmx:100818984 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03465 1 539273415 539275663 Vifa1g03465 1 539273415 539275663 ECH
Vifa1g03465 1 539273415 539275663 Vifa1g03465 1 539273415 539275663 PCT