Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03410 ATGGAATCTCCACAATCTGTTGTGTCACCATTCAAGATCTCTGTCATGGAAGATGGTGAGAAGTATAAATCTGATCTTTTCACAAAAACCTCAAGTCCTTTGTCTAAGGACATTGAAGTCAATAGAAAAGAAGCTCTTGCATTGCCTAATCACGACGAATTCGTTGGAGTAGTTGATGTTTACATACTTCAAGCTAGGGACATTCATAACATCTGCATATACCAGAAACAAGATGTTTATGCTAAGATTTGTTTAACTAGTGATCCCGAGAATTCGGCCTCTACCAAAATCATCAACGGAGGAGGAAGGAACCCCGTGTTTAATGACAATCTTCGTCTAAGCGTTAGGACGGTCGAGTCTTGTCTCAAATGTGAGATTTGGATGCTTAGCAGGGTGAAGAATTATCTCGAAGACCAGTTACTTGGTTTTGCTTTAGTACCTTTGTGTGAAGTTTTGATGGAAGACGGAAAACTAGAGAAAGAGTTCTCTCTTTCTTCGACCGATCTATTCCATTCACCCGCAGGTTTTGTTCAATTATCTCTATCTTACGCTGGCGTTTCGCCTGATGTTATGGTGATTTCTTCAAGGCCTAATATTGAACTGGACAAAAACGGAACCGATAAAGACTCTGAAACACGCGAGTCACTCTGGAGAGATTTAGATAAAATCGAGTTCCCGGATCCGAAAATTGCAAGCGAAGACCATTTAATGGTTTCAGAATACTTTGGTACTGATAGCTTGGCCACTACTGATAGTGAAAGTCTGGGTTCAGAAAGAGGTGTTCAGTTTGTGGAAAGCTTATCAGCATCTAGTTTTGAATCTATTCAACCACCTAGCCATGTATCCACGAATGGAGTTTCCTCTCTTTCACCTTCTGCAAGCTCAAACGAGCAAGAGAAACACGTTGATGTAGACGACAGTAAGCGTGATTCATCATTCCAGAAACCTGTTGCGAATGTGAATATTGAGCCAGAACCAAAGATGGTTCAGCAGGATATAGTAGACATGTATATGAAAAGTATGCAGCAATTTACCGAGTCATTAGCGAAAATGAAGCTTCCTATGGACTTTGAAAATGGACCAACTAGTTCAAGAAACTCGACCTCCGAACAGAAACTACAATCACCCAAGAGTACTAACTCACGCGTCTTTTACGGTAGCAGTGCTTTCTTCTGA 1176 0.409 MESPQSVVSPFKISVMEDGEKYKSDLFTKTSSPLSKDIEVNRKEALALPNHDEFVGVVDVYILQARDIHNICIYQKQDVYAKICLTSDPENSASTKIINGGGRNPVFNDNLRLSVRTVESCLKCEIWMLSRVKNYLEDQLLGFALVPLCEVLMEDGKLEKEFSLSSTDLFHSPAGFVQLSLSYAGVSPDVMVISSRPNIELDKNGTDKDSETRESLWRDLDKIEFPDPKIASEDHLMVSEYFGTDSLATTDSESLGSERGVQFVESLSASSFESIQPPSHVSTNGVSSLSPSASSNEQEKHVDVDDSKRDSSFQKPVANVNIEPEPKMVQQDIVDMYMKSMQQFTESLAKMKLPMDFENGPTSSRNSTSEQKLQSPKSTNSRVFYGSSAFF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03410 391 SMART C2_3c 57 160 IPR000008 -
Vifa1g03410 391 MobiDBLite consensus disorder prediction 355 391 - -
Vifa1g03410 391 Pfam C2 domain 57 162 IPR000008 -
Vifa1g03410 391 ProSiteProfiles C2 domain profile. 39 162 IPR000008 -
Vifa1g03410 391 PANTHER EXPRESSED PROTEIN 1 391 - -
Vifa1g03410 391 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 52 186 IPR035892 -
Vifa1g03410 391 MobiDBLite consensus disorder prediction 359 391 - -
Vifa1g03410 391 Gene3D C2 domain 51 198 IPR035892 -
Vifa1g03410 391 MobiDBLite consensus disorder prediction 298 312 - -
Vifa1g03410 391 MobiDBLite consensus disorder prediction 274 297 - -
Vifa1g03410 391 MobiDBLite consensus disorder prediction 274 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03410 Vifa-Chr1 530918052 530919227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03410 - - gmx:100781587 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03410 1 530918052 530919227 Vifa1g03410 1 530918052 530919227 ECH
Vifa1g03410 1 530918052 530919227 Vifa1g03410 1 530918052 530919227 PCT