Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03368 ATGTCACATAGAATATCTGTCCTTTTCTTGTCCTTTCTATTAATCTCAACAGCCACTGTTTCTGTTGAAGATGGTTTCATCTCTGTGATTATATCTGATAAGGGTCTTGACTTTGTCAAAGACATTCTAATAAACCAAGCTATTGCATCTATAGTTGTTTCTCAGCTTCCACAAATTGAGAAATCTGTTCAAGTTCCTCTTGTTGGAAAAGCTCATGTCATTCTTTCTGAGATCACAATTAAGAATATTCAAGTGAGTTCTTCATTTGTTGAAACTGGTGATACTGGTATTGTTGTTGTTGTTTCAGGTGCTACTGCTAATTTGAGCTTGAATTGGAGGTATACTGTTAGTAGTTGGTTGGTCCCAATTGGAATTTCAGATAGTGGAACTGCCACTGTTAAGGTTGAAGATATGCAAGTGGGACTAACCGTAAATTTAACGAACCAAGGAGGAACTTTAAAGCTGAATCTCTTAGATTATGGATGTGATGTTGGAGAGTTATCGATAAAAATGAACGGTGGAGCTGCTTGGCTTTATCAAGTGCTAGTTGATGCTTTTAAAGGAAATATCGGATCTGCAGTTGAAGATGCTGTTTCCAAGAAAATACAAGAAGGGATACCGACTCTTGACGATTTACTGCAAACTCTTCCGAAGACAATTTCATTAGACAAAACTGCTGCTCTAAATGTTTCTTTCGTCGACAATCCTGTGCTGAGTAACTCTTCTATCGAACTCAAAATCAACGGTTTATTCAGTGAGAGAAAGGGTGTTTTAGTACCTCAAAGTTACCATAAAGGATCTGATCATATTTCTGTTTCCAATGGTGATTTACCAAAGATGATCAACATTTCTATACATGAAAAAGTTTTCAAATCGGCCTCCGAATTTTACTTTGCAGCAGATGCGTTGCAATGGATACTTGATGAACTGCCTAATCAATCCCTTTTGAACACTGCTGAATGGAAACTCATCATTCCTCAATTGTACAAACAATATCCAAATGATGACATGAAACTTAATATCTCGATATCTTCTCCACCGTTTATAGAAGTGTCTGACCAAGATATCGACGCTACCATTTCAATAGATTTAATCATTGATGTTTTGGAAGCCGGTGAAGTCATACCTGTCACATGCATCTCTGTGAACATCAGTGCTTCATGTGACGCGGAAATTATTCGAAAAAGTCTCACGGGCCGGCTTAAATTGAAGAAGTTCTCCACATACTTAAAATGGAGCAAAATAGGGAAACTTCACATGAATGTAATTCAGTCATTGACATCAACTGTCCTCAAAACCGTCCTGATACCGTACTTGAACTCACAGTTAAAGAAGGGAATTCCGTTGCCGATTCTTAAGGGTTTCGCCCTTGATAAGGCTCGAATCTTGTACACTCCGCCGTCAATTGGAGTGTCTAGTGATGTAACCTTCTTAGGAGACTACTATCTTAGACATCATCTAGCTTATGTTTCATAA 1476 0.3794 MSHRISVLFLSFLLISTATVSVEDGFISVIISDKGLDFVKDILINQAIASIVVSQLPQIEKSVQVPLVGKAHVILSEITIKNIQVSSSFVETGDTGIVVVVSGATANLSLNWRYTVSSWLVPIGISDSGTATVKVEDMQVGLTVNLTNQGGTLKLNLLDYGCDVGELSIKMNGGAAWLYQVLVDAFKGNIGSAVEDAVSKKIQEGIPTLDDLLQTLPKTISLDKTAALNVSFVDNPVLSNSSIELKINGLFSERKGVLVPQSYHKGSDHISVSNGDLPKMINISIHEKVFKSASEFYFAADALQWILDELPNQSLLNTAEWKLIIPQLYKQYPNDDMKLNISISSPPFIEVSDQDIDATISIDLIIDVLEAGEVIPVTCISVNISASCDAEIIRKSLTGRLKLKKFSTYLKWSKIGKLHMNVIQSLTSTVLKTVLIPYLNSQLKKGIPLPILKGFALDKARILYTPPSIGVSSDVTFLGDYYLRHHLAYVS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03368 491 PIRSF Lipid_binding_protein 4 481 IPR030675 GO:0005615|GO:0008289
Vifa1g03368 491 Gene3D - 34 214 - -
Vifa1g03368 491 SMART bpi2_2 275 473 IPR001124 GO:0008289
Vifa1g03368 491 Gene3D - 28 462 - -
Vifa1g03368 491 SMART bpi1_3 31 256 IPR017942 GO:0008289
Vifa1g03368 491 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 27 240 IPR017943 GO:0008289
Vifa1g03368 491 Pfam LBP / BPI / CETP family, N-terminal domain 35 206 IPR017942 GO:0008289
Vifa1g03368 491 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 241 476 IPR017943 GO:0008289
Vifa1g03368 491 PANTHER OS06G0309200 PROTEIN 7 487 IPR045897 -
Vifa1g03368 491 Pfam LBP / BPI / CETP family, C-terminal domain 278 460 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03368 Vifa-Chr1 526432442 526434782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03368 K05399 - gmx:100804747 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03368 1 526432442 526434782 Vifa1g03368 1 526432442 526434782 ECH
Vifa1g03368 1 526432442 526434782 Vifa1g03368 1 526432442 526434782 PCT