Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03354 ATGGCGAACGAAAACGAACCCGCGAAACTCCTCTTGCCATACCTTCAACGCGCCGATGAATTGCAGAAACACGAACCTCTCGTTGCTTATTACTGTCGATTGTATGCGATGGAGCGTGGATTGAAGATTCCGCAAAGTGATCGCACCAAAACCACTAATTCTCTTCTTGTTTCACTAATGAAACAGCTCGAAAAGGATAAAAAGTCAATCCAGCTGGGGCCTGAAGATAATTTATATCTTGAGGGATTTGCTTTGAATGTGTTTGGAAAAGCAGACAAGCAAGATCGTGCTGGAAGAGCAGATATAAGTACGGCAAAAACATTTTACGCTGCTAGCATCTTTTTTGAGATTCTTAATCAATTCGGACCAGTTCAGCCTGATCTGGAGCAGAAGCAGAAGTATGCAGCATGGAAAGCAGCTGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCTGTGGCTGGTCCACCTGCTGGCGATGAGGACCTGTTTGTTCCATCGAGTTCTCCTAGTATTAGATATGATCCTGGGGCTACCGAAACTTCTGCTTCCAGTGCTGGATCAGAATCTGATTCAACACGTAGTTATCATAACCCTGCCAACTACCAGAATATGCCCAGCATTCATCCTGCACCTAAATTCAATGATACTGTAAATGATCAGAATTCTGCAAACATTCAACCATCTTCGCAGTTTCATGATAGAGTAGATGATAATAAGCGTTCTTCAATTGTTTCTCCATCATCTCACTCTTATACACCTGGAGTTTATCCTTCTCAAGACTTCCATCCACCTCCGTCTTCCCAGGATTATCATCATCCACCTCCATCTTCCCAAGATTATCATCATCCACCACCATCCCAGGATTATCATCATCAGCCACCTTCCCAAGATTATCATCATCAGCCACCTTCCCAAGATTATCATCCTCCACCACCTTCCCAGGAATCAGACAGTTCTTATTCTGAGCCCTACAATCACCAGCAATACTCACCAGATCAGTCACAGAATTTAGGTCTTAATTACCCTTCTCATGAAACACCCTCTGCATACAGTCTTCCCCATTTTCAATCTTATCCAAGTTTTTCAGAAAGCACCCTACCATCGGTACCAGTAAACCAGACTTATTATCAAGGGCCCGATGCTTCATATTCTTCCCAGTCAGCTCCTCTAGCTACAAACCATTCATTAAATGCCCAAAACAGTCTCAGCAACAGAAATGGATCTGTCTTGGAGCCCAAGTCAACAACTCAGACATACCAGTATGACAGTAATTACCAGCCAGCACCTGAAAGAATAGCAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGGGCACTGGCATTCGATGACGTCTCAATTGCAGTAGACTACTTGAAGAAATCACTCGAGTTGCTGACAAATCCATCAGTTGGCCAGTAA 1422 0.4374 MANENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSDRTKTTNSLLVSLMKQLEKDKKSIQLGPEDNLYLEGFALNVFGKADKQDRAGRADISTAKTFYAASIFFEILNQFGPVQPDLEQKQKYAAWKAADIRKALKEGRKPVAGPPAGDEDLFVPSSSPSIRYDPGATETSASSAGSESDSTRSYHNPANYQNMPSIHPAPKFNDTVNDQNSANIQPSSQFHDRVDDNKRSSIVSPSSHSYTPGVYPSQDFHPPPSSQDYHHPPPSSQDYHHPPPSQDYHHQPPSQDYHHQPPSQDYHPPPPSQESDSSYSEPYNHQQYSPDQSQNLGLNYPSHETPSAYSLPHFQSYPSFSESTLPSVPVNQTYYQGPDASYSSQSAPLATNHSLNAQNSLSNRNGSVLEPKSTTQTYQYDSNYQPAPERIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSVGQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03354 473 MobiDBLite consensus disorder prediction 149 352 - -
Vifa1g03354 473 Gene3D Immunoglobulin FC, subunit C 429 468 - -
Vifa1g03354 473 Pfam Vta1 C-terminal domain 430 467 IPR041212 -
Vifa1g03354 473 Pfam Vta1 like 13 148 IPR039431 -
Vifa1g03354 473 MobiDBLite consensus disorder prediction 268 282 - -
Vifa1g03354 473 MobiDBLite consensus disorder prediction 312 352 - -
Vifa1g03354 473 MobiDBLite consensus disorder prediction 399 422 - -
Vifa1g03354 473 MobiDBLite consensus disorder prediction 172 232 - -
Vifa1g03354 473 MobiDBLite consensus disorder prediction 242 266 - -
Vifa1g03354 473 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 306 469 IPR044538 GO:0032511
Vifa1g03354 473 Gene3D - 4 152 IPR023175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03354 1 118 Glycosyltransferase AT1G05570 26.154 1.27e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03354 K12199 - gmx:100783739 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03354 1 524382513 524385180 Vifa1g03354 1 524382513 524385180 ECH