Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03352 ATGGCAGTAACTGAAGCTCAAAACCCTCTTATTGGAGAACACACATGTGGTTCCTTGTTGAAGAAGCTGCAGGAAATATGGGACGAGGTTGGGGAAAGTGATGAGGAAAGGGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGCATGCTACAAAGTCGAGGGCACAACTACTTCAATCCTTGTCTGATGCTCAGCTTGAGCTTTCTACTCTTCTATCTGCTCTTGGAGAAAAGAGCTTTGCTGGAATTCCTGATAATACTTCTGGAACTATCAAGGAACAGCTTGCAGCTATAGCACCTGTACTTGAGCAGTTATGGGAACAAAAGGAAGAAAGAATAAAGGATTTCTCAGATGTACAGTCACAGATACAAACAATTTGCGGAGAGATAACTGGGAGCTTGAACCGTAACGATGTTCCTGTAGTTGATGAGTCTGACCTGTCTCTAAAGAAGTTTGAGGAATATCAATCTGAGCTTCACGAACTTCAAAAGGAAAAGAGTGACAGATTGCAAAAGGTTTTTGAATTGGTGAGTACTGTGCATGATCTTTGTGCAGTCCTTGGTATGGACTTCTTCAGTACTGTAACTGAGGTTCATCCAAGCCTGAATGATTCCACTGGTGTTCAATCCAAAAGTATAAGCAATGACACCCTAGCTAGGCTTGCTAACACAGTCTTAACGCTGAAAGAAGATAAAAAGCAGAGGCTGCACAAGCTCCAAGAATTAGCTTCTCAGTTAATTGATCTATGGAATCTAATGGATACTCCTCAAGAGGAAAGGAAACTGTTTGACCATGTTACCTGTAATATCTCAGCTTCTGTTGATGAAGTCACTATTCCTGGTTCCCTTGCCCTAGATCTGATTGAGCAGGCTGAAGTGGAAGTTGAGAGACTCGACCAGCTTAAAGCAAGCAGGATGAAGGAAATTGCTTTCAAGAAACAATCAGAACTCGAAGAGATATTTGCCCATGCTCATATAGAAATAGACTCAGATGTTGCAAGGGAGAAGATCATGGCATTGATTGATTCTGGAGACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAAATAGCAAAAGCGAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGCTGGCTTGAGGACTATAATCGGGACGAGAACAGGTATAATGCAAGCAGAGGAGCACACTTAAACCTCAAACGAGCAGAGAAAGCTCGGATATTGGTAAATAAAATTCCGGCTTTGGTTGAGACTTTGGTTGCTAAAACACGTGTATGGGAAGAGACTCATGATATGTCATTCACATATGATGGTGTTCCTCTTCTAGCTATGTTAGATGAATATGCCATGCTTAGGCATGAACGGGAAGAAGAAAAACGAAGAATGAGGGACCAGAAGAAATTTCAGGATTTGCAAATCACAGAACCAGAAGCCCCATTTGGTTCAAAACCCAGTCCTGCTAGGCCAGTTAGTGCTAAGAAGGGAGGTGGCCCTCGTGTTAATGGAGGAGCCAACGGTACTCCTAGCCGACGGCTATCACTTAATGCTCATCAAAATGGAAGCAGGTCCATAGCAAAAGATGGAAAAAGGGATAATACTAGACCTGTGGCTCCTGTGAATTATGTGGCTATGTCAAAAGAAGATGCTGCATCCCATGTTTCTGGTACTGAACCCATCCCAGCATCACCATAA 1749 0.426 MAVTEAQNPLIGEHTCGSLLKKLQEIWDEVGESDEERDKMLLQLEQECLDVYKRKVEHATKSRAQLLQSLSDAQLELSTLLSALGEKSFAGIPDNTSGTIKEQLAAIAPVLEQLWEQKEERIKDFSDVQSQIQTICGEITGSLNRNDVPVVDESDLSLKKFEEYQSELHELQKEKSDRLQKVFELVSTVHDLCAVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLANTVLTLKEDKKQRLHKLQELASQLIDLWNLMDTPQEERKLFDHVTCNISASVDEVTIPGSLALDLIEQAEVEVERLDQLKASRMKEIAFKKQSELEEIFAHAHIEIDSDVAREKIMALIDSGDIEPTELLADMDNQIAKAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVETLVAKTRVWEETHDMSFTYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKKFQDLQITEPEAPFGSKPSPARPVSAKKGGGPRVNGGANGTPSRRLSLNAHQNGSRSIAKDGKRDNTRPVAPVNYVAMSKEDAASHVSGTEPIPASP 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03352 582 Gene3D - 367 501 - -
Vifa1g03352 582 MobiDBLite consensus disorder prediction 475 490 - -
Vifa1g03352 582 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 13 569 IPR007145 GO:0000226|GO:0008017
Vifa1g03352 582 Coils Coil 154 181 - -
Vifa1g03352 582 Coils Coil 238 258 - -
Vifa1g03352 582 FunFam 65-kDa microtubule-associated protein 6 368 501 - -
Vifa1g03352 582 Coils Coil 460 480 - -
Vifa1g03352 582 Coils Coil 297 317 - -
Vifa1g03352 582 MobiDBLite consensus disorder prediction 525 541 - -
Vifa1g03352 582 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 506 - -
Vifa1g03352 582 MobiDBLite consensus disorder prediction 475 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03352 Vifa-Chr1 523609082 523611991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03352 13 527 EF-hand Containing Proteins AT5G62250 44.571 8.83e-129 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03352 K16732 - gmx:100806071 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03352 1 523609082 523611991 Vifa1g03352 1 523609082 523611991 ECH
Vifa1g03352 1 523609082 523611991 Vifa1g03352 1 523609082 523611991 PCT