Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03351 ATGAAAGATTCAAATGCGGATCATAGCTGTACTTCACCGAAAACTCCAAATTTTCGACAAAGACGGCGTTTAAACGAGATTCTTCCTGATATAAACAAATCAAATGGAATCCTTTTACTTGCAAATGATAAATATAAATACAAATCAATGTGGATTCGCGCATATTCGTCTCTATGGATGCTAGCATGCGTCGCACTTATCATATACATGGGTCATCTTTACATCTGGGCAATGATGGTTGTTATCCAAATTTTTATGGCTAGAGAGCTCTTCAATCTACTGAGAATAGCGAATCAAGATAAACGTCTCCCGAAGTTTAAGCTCTTGAACTGGCATTTCTTCTTCACGGCAATGCTATACGTATACGGCCGTATCCTCAGTCAGCACCTTGTGAATACAGTCACATCAGATAAATTTTTCTATAGACTTGTCAGTAAACTCATCAAGTATCAAATGGTTATATGTTACTTCTTATACATTGCAGGTTTTGTATGGTTTATTCTTTCATTAAAGAAGAGATACTACAAGTATCAATTTGGACAGTATGCATGGACACACATGATACTTATCATTGTGTTTACACAGTCTGCATTCATGGTAGCTAATATATTTCAAGGAATTTTCTGGTTTCTTTTCCCTGCGCTTCTTATTGCTATGAATGATGTTGCTGCGTATTTCTTTGGTTTCTTCTTTGGGAAAACACCTCTAATCAAGTTATCTCCGAAGAAAACATGGGAAGGTTTTATTGGAGCGTCTGTTGCAACTATGATTGCTGCCTTTACATGGCTAACATGTCCAAGGAAGGATTTATCAACTGGTTGGCTTGAGTGTGACCCTGATCCAATTTTTAAGCCAGATTACATTCCAATGCTAGGACTTGTTCCTCATGGGATACCTGAGAAAGAGATAGCAGTTTTGCCAGTACAGTGGCATGCTTTGTGGCTAGGACTATTTGCGTCCATCATCGCACCGTTCGGAGGATTCTTCGCTAGCGGTTTCAAAAGAGCTTTTAAAATCAAGGACTTTGGTGACAGTATACCTGGACATGGTGGATTTACTGACAGAATGGACTGCCAGATGGTGATGGCTGTTTTTGTTTACATTTACCACCAGTCATTTGTTGTCCCCCATGACTATTCCATTGATGTGCTTTTGGATCAGATAATGAGGGACCTTGGTTTTGAGGACCAGCTAGCTCTTTACACAAAACTTGGACAGATATTACAAGAAAGGCATCTACTCTAG 1245 0.3904 MKDSNADHSCTSPKTPNFRQRRRLNEILPDINKSNGILLLANDKYKYKSMWIRAYSSLWMLACVALIIYMGHLYIWAMMVVIQIFMARELFNLLRIANQDKRLPKFKLLNWHFFFTAMLYVYGRILSQHLVNTVTSDKFFYRLVSKLIKYQMVICYFLYIAGFVWFILSLKKRYYKYQFGQYAWTHMILIIVFTQSAFMVANIFQGIFWFLFPALLIAMNDVAAYFFGFFFGKTPLIKLSPKKTWEGFIGASVATMIAAFTWLTCPRKDLSTGWLECDPDPIFKPDYIPMLGLVPHGIPEKEIAVLPVQWHALWLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFVVPHDYSIDVLLDQIMRDLGFEDQLALYTKLGQILQERHLL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03351 414 ProSitePatterns Phosphatidate cytidylyltransferase signature. 331 357 IPR000374 GO:0016020|GO:0016772
Vifa1g03351 414 PIRSF CDP-DAG_synth_e 2 414 IPR016720 GO:0004605
Vifa1g03351 414 PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE 14 412 IPR016720 GO:0004605
Vifa1g03351 414 Pfam Cytidylyltransferase family 52 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03351 Vifa-Chr1 522830149 522832598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03351 1 411 Lipid Metabolism Gene Families AT4G26770 70.755 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03351 K00981 - gmx:100805363 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03351 1 522830149 522832598 Vifa1g03351 1 522830149 522832598 ECH